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(-) Description

Title :  CRYSTAL STRUCTURE OF BRCA1 BRCT WITH DOUBLY PHOSPHORYLATED ABRAXAS
 
Authors :  D. Badgujar, A. K. Varma
Date :  13 Mar 13  (Deposition) - 10 Sep 14  (Release) - 10 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kinase-Protein Binding Complex, Antitumor Protein-Signaling Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Badgujar, A. K. Varma
Crystal Structure Of Brca1 Brct With Doubly Phosphorylated Abraxas
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN
    Chains: A
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PGEX-KT
    Fragment: UNP RESIDUES 1649-1859
    Gene: BRCA1, RNF53
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RING FINGER PROTEIN 53
 
Molecule 2 - BRCA1-A COMPLEX SUBUNIT ABRAXAS
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 399-409
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.
    Synonym: COILED-COIL DOMAIN-CONTAINING PROTEIN 98, PROTEIN FAM175A
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1SEP2Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:1655 , GLY A:1656 , THR A:1677 , ASN A:1678 , LEU A:1679 , THR A:1691 , GLU A:1698 , ARG A:1699 , THR A:1700 , LEU A:1701 , LYS A:1702BINDING SITE FOR CHAIN B OF BRCA1-A COMPLEX SUBUNIT ABRAXAS

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JLU)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:1770 -Pro A:1771
2Phe B:400 -Gly B:401

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JLU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JLU)

(-) Exons   (0, 0)

(no "Exon" information available for 4JLU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...hhhhhhhhhhhhhhh.............eee...........hhhhhh.........hhhhhhhhhh......................hhhhhhhhh........eeeee.......hhhhhhhhhhhhh.....hhhhh......eeeeee.....................eeehhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4jlu A 1649 RMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIP 1859
                                  1658      1668      1678      1688      1698      1708      1718      1728      1738      1748      1758      1768      1778      1788      1798      1808      1818      1828      1838      1848      1858 


Chain B from PDB  Type:PROTEIN  Length:11
                                            
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                4jlu B  399 GFGEYsRsPTF  409
                                 | 408 
                               404-SEP 
                                 406-SEP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JLU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JLU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JLU)

(-) Gene Ontology  (101, 112)

Asymmetric/Biological Unit(hide GO term definitions)

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  4jlu
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  F175A_HUMAN | Q6UWZ7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRCA1_HUMAN | P38398: 1jm7 1jnx 1n5o 1oqa 1t15 1t29 1t2u 1t2v 1y98 2ing 3coj 3k0h 3k0k 3k15 3k16 3pxa 3pxb 3pxc 3pxd 3pxe 4ifi 4igk 4ofb 4u4a 4y18 4y2g
        F175A_HUMAN | Q6UWZ7: 4u4a 4y18 4y2g

(-) Related Entries Specified in the PDB File

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