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(-) Description

Title :  PPIASE IN COMPLEX WITH A NON-PHOSPHATE SMALL MOLECULE INHIBITOR.
 
Authors :  S. E. Greasley, R. A. Ferre
Date :  08 Jul 14  (Deposition) - 20 Aug 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Sbdd, Ppiase, Cell Cycle, Isomerase, Small Molecule, Nucleus, Phosphoprotein, Rotamase, Peptidyl-Prolyl Cis-Trans Isomerase, Isomerase-Isomerase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Guo, X. Hou, L. Dong, J. Marakovits, S. Greasley, E. Dagostino, R. Ferre, M. Catherine Johnson, P. S. Humphries, H. Li, G. D. Paderes, J. Piraino, E. Kraynov, B. W. Murray
Structure-Based Design Of Novel Human Pin1 Inhibitors (Iii) Optimizing Affinity Beyond The Phosphate Recognition Pocket
Bioorg. Med. Chem. Lett. V. 24 4187 2014
PubMed-ID: 25091930  |  Reference-DOI: 10.1016/J.BMCL.2014.07.044

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1
    Chains: A, B
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: PPIASE DOMAIN, UNP RESIDUES 45-163
    Gene: PIN1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PIN1,PPIASE PIN1, ROTAMASE PIN1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
139X2Ligand/Ion3-(6-FLUORO-1H-BENZIMIDAZOL-2-YL)-N-(NAPHTHALEN-2-YLCARBONYL)-D-ALANINE
2GOL2Ligand/IonGLYCEROL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
139X1Ligand/Ion3-(6-FLUORO-1H-BENZIMIDAZOL-2-YL)-N-(NAPHTHALEN-2-YLCARBONYL)-D-ALANINE
2GOL1Ligand/IonGLYCEROL
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
139X1Ligand/Ion3-(6-FLUORO-1H-BENZIMIDAZOL-2-YL)-N-(NAPHTHALEN-2-YLCARBONYL)-D-ALANINE
2GOL1Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:59 , LEU A:61 , LYS A:63 , CYS A:113 , SER A:114 , SER A:115 , LEU A:122 , GLN A:131 , PHE A:134 , SER A:154 , HIS A:157 , HOH A:312binding site for residue 39X A 201
2AC2SOFTWARETHR A:79 , GLU A:84 , VAL A:150 , PHE A:151 , HOH A:303 , HOH A:314 , HOH A:375binding site for residue GOL A 202
3AC3SOFTWAREHIS B:59 , LEU B:61 , LYS B:63 , ARG B:68 , ARG B:69 , CYS B:113 , SER B:114 , SER B:115 , LEU B:122 , GLN B:131 , PHE B:134 , SER B:154 , GOL B:202 , HOH B:307 , HOH B:318 , HOH B:341binding site for residue 39X B 201
4AC4SOFTWAREARG B:68 , GLN B:129 , GLN B:131 , 39X B:201 , HOH B:303 , HOH B:307 , HOH B:309binding site for residue GOL B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TYO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TYO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4TYO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee..................hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhh.eeeeee....hhhhhhhhhhh........eee..eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 4tyo A  51 EPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163
                                    60        70        80        90       100       110       120       130       140       150       160   


Chain B from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee..................hhhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhh.eeeee.....hhhhhhhhhh.........ee....eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 4tyo B  49 QGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163
                                    58        68        78        88        98       108       118       128       138       148       158
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TYO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TYO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TYO)

(-) Gene Ontology  (42, 42)

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  4tyo
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  PIN1_HUMAN | Q13526
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  5.2.1.8
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  PIN1_HUMAN | Q13526
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PIN1_HUMAN | Q13526: 1f8a 1i6c 1i8g 1i8h 1nmv 1nmw 1pin 1zcn 2f21 2itk 2kbu 2kcf 2lb3 2m8i 2m8j 2m9e 2m9f 2m9i 2m9j 2n1o 2q5a 2ruc 2rud 2ruq 2rur 2xp3 2xp4 2xp5 2xp6 2xp7 2xp8 2xp9 2xpa 2xpb 2zqs 2zqt 2zqu 2zqv 2zr4 2zr5 2zr6 3i6c 3ik8 3ikd 3ikg 3jyj 3kab 3kac 3kad 3kaf 3kag 3kah 3kai 3kce 3ntp 3odk 3oob 3tc5 3tcz 3tdb 3wh0 4gwt 4gwv 4qib 4tns 4u84 4u85 4u86 5b3w 5b3x 5b3y 5b3z 5bmy 5uy9

(-) Related Entries Specified in the PDB File

3i6c SAME PROTEIN CONSTRUCT WITH SMALL MOLECULE ANALOG INHIBITORS BOUND.
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