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(-) Description

Title :  APO RESORUFIN LIGASE
 
Authors :  P. J. Goldman, C. L. Drennan
Date :  28 Jun 14  (Deposition) - 22 Oct 14  (Release) - 05 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  E. Coli Lpla, Computational Enzyme Design, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. S. Liu, L. G. Nivon, F. Richter, P. J. Goldman, T. J. Deerinck, J. Z. Yao, D. Richardson, W. S. Phipps, A. Z. Ye, M. H. Ellisman, C. L. Drennan, D. Baker, A. Y. Ting
Computational Design Of A Red Fluorophore Ligase For Site-Specific Protein Labeling In Living Cells.
Proc. Natl. Acad. Sci. Usa V. 111 E4551 2014
PubMed-ID: 25313043  |  Reference-DOI: 10.1073/PNAS.1404736111

(-) Compounds

Molecule 1 - LIPOATE-PROTEIN LIGASE A
    Chains: A, B
    EC Number: 2.7.7.63
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: LPLA, YJJF, B4386, JW4349
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
    Synonym: LIPOATE--PROTEIN LIGASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
137R4Ligand/Ion5-(3,7-DIHYDROXY-10H-PHENOXAZIN-2-YL)PENTANAMIDE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
137R2Ligand/Ion5-(3,7-DIHYDROXY-10H-PHENOXAZIN-2-YL)PENTANAMIDE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
137R2Ligand/Ion5-(3,7-DIHYDROXY-10H-PHENOXAZIN-2-YL)PENTANAMIDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:17 , ARG A:70 , SER A:72 , GLY A:74 , GLY A:75 , HIS A:79 , ALA A:138 , 37R A:402binding site for residue 37R A 401
2AC2SOFTWAREVAL A:77 , HIS A:79 , GLY A:149 , GLY A:150 , THR A:151 , 37R A:401 , HOH A:531binding site for residue 37R A 402
3AC3SOFTWARESER B:137 , ALA B:138 , GLY B:149 , GLY B:150 , THR B:151 , 37R B:402binding site for residue 37R B 401
4AC4SOFTWARELEU B:17 , ARG B:70 , SER B:72 , GLY B:75 , VAL B:77 , HIS B:79 , ALA B:138 , 37R B:401binding site for residue 37R B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TVY)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:92 -Pro A:93
2Lys B:92 -Pro B:93

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TVY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TVY)

(-) Exons   (0, 0)

(no "Exon" information available for 4TVY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhh.....eeeeee....eeee....hhhhhhhhhhhhhh..eeee.......eee...eeeeeeeee....hhhhhhhhhhhhhhhhh..eeee...eeee......eeeeeeeeee...eeeeeeeee.....hhhhhh...hhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhh....eeee.........hhhhhhhhhhhhhhhh.......eeeeeee..eeeeeeeeee..eeeeeeeee....hhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tvy A   1 STLRLLISDSYDPWFNLAVAECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTISTSIVLNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKDRGAHGGTLLLNADLSRLANYLNPDKKKLAARVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPNKTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVDFPEQEKELRELSAWMAGAVR 337
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   ||  188       198       208       218       228       238       248       258       268       278       288       298       308       318       328         
                                                                                                                                                                                                       174|                                                                                                                                                          
                                                                                                                                                                                                        183                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhh.....eeeeee....eeee....hhhhhhhhhhhhhh..eeee.......eee...eeeeeeeee....hhhhhhhhhhhhhhhhh..eeee...eeee......eeeeeeeeee...eeeeeeeee......hhhhhh....hhhhh....hhhhhhhhhhhhhhhhhh.....eee.........hhhhhhhhhhhhhhhh.......eeeeeee..eeeeeeeeee..eeeeeeeee....hhhhhhhhhhhh....hhhhhhhhh......hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tvy B   1 STLRLLISDSYDPWFNLAVAECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTISTSIVLNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKDRGAHGGTLLLNADLSRLANYLNRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPNKTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVDFPEQEKELRELSAWMAGAVR 337
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     ||186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336 
                                                                                                                                                                                               166|                                                                                                                                                          
                                                                                                                                                                                                183
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TVY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TVY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TVY)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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  LPLA_ECOLI | P32099
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  2.7.7.63
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LPLA_ECOLI | P32099: 1x2g 1x2h 3a7a 3a7r 4tvw

(-) Related Entries Specified in the PDB File

3a7r
4tvw 4TVW CONTAINS THE SAME PROTEIN IN A CATALYTIC CONFORMATION