1X2H - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF LIPATE-PROTEIN LIGASE A FROM ESCHERICHIA COLI COMPLEXED WITH LIPOIC ACID

Authors :   K. Fujiwara, S. Toma, K. Okamura-Ikeda, Y. Motokawa, A. Nakagawa, H. Taniguchi

Date :   23 Apr 05 (Deposition) - 02 Aug 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.91

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Lipoate-Protein Ligase, Lipoic Acid, Protein Acylation, Post-Translational Modification (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Fujiwara, S. Toma, K. Okamura-Ikeda, Y. Motokawa, A. Nakagawa, H. Taniguchi
Crystal Structure Of Lipoate-Protein Ligase A From Escherichia Coli: Determination Of The Lipoic Acid-Binding Site
J. Biol. Chem. V. 280 33645 2005
PubMed-ID: 16043486 | Reference-DOI: 10.1074/JBC.M505010200
(for further references see the PDB file header)

Molecule 1 - LIPOATE-PROTEIN LIGASE A
	Chains	:	A, B, C
	EC Number	:	6.3.2.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-3A
	Expression System Strain	:	B834(DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 17)

No.	Name	Count	Type	Full Name
1	LPA	2	Ligand/Ion	LIPOIC ACID
2	MSE	15	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	LPA	1	Ligand/Ion	LIPOIC ACID
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	LPA	1	Ligand/Ion	LIPOIC ACID
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 5)

No.	Name	Count	Type	Full Name
1	LPA	-1	Ligand/Ion	LIPOIC ACID
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:21 , PHE A:24 , SER A:72 , ARG A:140 , PHE A:147 , HIS A:149	BINDING SITE FOR RESIDUE LPA A 338
2	AC2	SOFTWARE	LEU B:17 , GLU B:21 , PHE B:24 , ALA B:138 , ARG B:140 , HIS B:149	BINDING SITE FOR RESIDUE LPA B 338

(no "SS Bond" information available for 1X2H)

Asymmetric Unit

No.	Residues
1	Lys A:92	-	Pro A:93
2	Lys B:92	-	Pro B:93
3	Lys C:92	-	Pro C:93

Asymmetric Unit (1, 3)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LPLA_ECOLI_001 *	G	74	S	LPLA_ECOLI	---	---	A/B/C	G	73	S
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LPLA_ECOLI_001 *	G	74	S	LPLA_ECOLI	---	---	A	G	73	S
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LPLA_ECOLI_001 *	G	74	S	LPLA_ECOLI	---	---	B	G	73	S
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LPLA_ECOLI_001 *	G	74	S	LPLA_ECOLI	---	---	C	G	73	S
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BPL_LPL_CATALYTIC	PS51733	Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile.	LPLA_ECOLI	29-216	3	A:28-215 B:28-215 C:28-215

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BPL_LPL_CATALYTIC	PS51733	Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile.	LPLA_ECOLI	29-216	1	A:28-215 - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BPL_LPL_CATALYTIC	PS51733	Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile.	LPLA_ECOLI	29-216	1	- B:28-215 -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BPL_LPL_CATALYTIC	PS51733	Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile.	LPLA_ECOLI	29-216	1	- - C:28-215

(no "Exon" information available for 1X2H)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:330
 aligned with LPLA_ECOLI | P32099 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:337
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       
           LPLA_ECOLI     2 STLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTISTSIVLNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPNKTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVDFPEQEKELRELSAWMAGAVR 338
               SCOP domains d1x2ha2 A:1-246 Two-domain LplA, N-terminal domain                                                                                                                                                                                                    d1x2ha1 A:247-337 Two-domain LplA, C-terminal domain                                        SCOP domains
               CATH domains 1x2hA01 A:1-249 putative lipoate-protein ligase, domain 1                                                                                                                                                                                                ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhh.....eeeeee....eeee....hhhhhhhhhhhhhh..eeee.......eee...eeeeeeeee....hhhhhhhhhhhhhhh....eee.....eee......eeeeeeeeee...eeeeeeeee.....hhhhhhh..hhhhhh..-------............hhhhhhhhhhhhhhhhhh....eeee.........hhhhhhhhhhhhhhhh.......eeeeeee..eeeeeeeeee..eeeeeeeee....hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------BPL_LPL_CATALYTIC  PDB: A:28-215 UniProt: 29-216                                                                                                                                            -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x2h A   1 STLRLLISDSYDPWFNLAVEECIFRQmPATQRVLFLWRNADTVVIGRAQNPWKECNTRRmEEDNVRLARRSSGGGAVFHDLGNTCFTFmAGKPEYDKTISTSIVLNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAK-------RVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPNKTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADmLQQECEALLVDFPEQEKELRELSAWmAGAVR 337
                                    10        20      | 30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |    -  |    190       200       210       220       230       240       250       260       270       280       290       300     | 310       320       330 |     
                                                     27-MSE                           60-MSE                       89-MSE                                                                               175     183                                                                                                                        306-MSE                   332-MSE

Chain B from PDB  Type:PROTEIN  Length:330
 aligned with LPLA_ECOLI | P32099 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:337
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       
           LPLA_ECOLI     2 STLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTISTSIVLNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPNKTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVDFPEQEKELRELSAWMAGAVR 338
               SCOP domains d1x2hb2 B:1-246 Two-domain LplA, N-terminal domain                                                                                                                                                                                                    d1x2hb1 B:247-337 Two-domain LplA, C-terminal domain                                        SCOP domains
               CATH domains 1x2hB01 B:1-249 putative lipoate-protein ligase, domain 1                                                                                                                                                                                                ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhh.....eeeeee....eeee....hhhhhhhhhhhhhhh.eeee.......eee...eeeeeeeee....hhhhhhhhhhhhhhhh...........eeeee..eeeeeeeeeeee...eeeeeeeee.....hhhhhh...hhhhhhh.-------....hhhhh...hhhhhhhhhhhhhhhhh......eee.........hhhhhhhhhhhhhhhh.......eeeeeee..eeeeeeeeee..eeeeeeeee....hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------BPL_LPL_CATALYTIC  PDB: B:28-215 UniProt: 29-216                                                                                                                                            -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x2h B   1 STLRLLISDSYDPWFNLAVEECIFRQmPATQRVLFLWRNADTVVIGRAQNPWKECNTRRmEEDNVRLARRSSGGGAVFHDLGNTCFTFmAGKPEYDKTISTSIVLNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAK-------RVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPNKTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADmLQQECEALLVDFPEQEKELRELSAWmAGAVR 337
                                    10        20      | 30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    |    -  |    190       200       210       220       230       240       250       260       270       280       290       300     | 310       320       330 |     
                                                     27-MSE                           60-MSE                       89-MSE                                                                               175     183                                                                                                                        306-MSE                   332-MSE

Chain C from PDB  Type:PROTEIN  Length:337
 aligned with LPLA_ECOLI | P32099 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:337
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       
           LPLA_ECOLI     2 STLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTISTSIVLNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPNKTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVDFPEQEKELRELSAWMAGAVR 338
               SCOP domains d1x2hc2 C:1-246 Two-domain LplA, N-terminal domain                                                                                                                                                                                                    d1x2hc1 C:247-337 Two-domain LplA, C-terminal domain                                        SCOP domains
               CATH domains 1x2hC01 C:1-249 putative lipoate-protein ligase, domain 1                                                                                                                                                                                                ---------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------------------------BPL_LplA_LipB-1x2hC04 C:45-157                                                                                   -----------------------------------------------------------------------------------------Lip_prot_lig_C-1x2hC01 C:247-332                                                      ----- Pfam domains (1)
           Pfam domains (2) --------------------------------------------BPL_LplA_LipB-1x2hC05 C:45-157                                                                                   -----------------------------------------------------------------------------------------Lip_prot_lig_C-1x2hC02 C:247-332                                                      ----- Pfam domains (2)
           Pfam domains (3) --------------------------------------------BPL_LplA_LipB-1x2hC06 C:45-157                                                                                   -----------------------------------------------------------------------------------------Lip_prot_lig_C-1x2hC03 C:247-332                                                      ----- Pfam domains (3)
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhhh.....eeeeee....eeee....hhhhhhhhhhhhhh..eeee.......eee...eeeeeeeee....hhhhhhhhhhhhhhh............eee......eeeeeeeeee...eeeeeeeee.....hhhhhhh.............................hhhhhhhhhhhhhhhhhh.....eee.........hhhhhhhhhhhhhhhh.......eeeeeee..eeeeeeeeee..eeeeeeeee....hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------BPL_LPL_CATALYTIC  PDB: C:28-215 UniProt: 29-216                                                                                                                                            -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x2h C   1 STLRLLISDSYDPWFNLAVEECIFRQmPATQRVLFLWRNADTVVIGRAQNPWKECNTRRmEEDNVRLARRSSGGGAVFHDLGNTCFTFmAGKPEYDKTISTSIVLNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPNKTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADmLQQECEALLVDFPEQEKELRELSAWmAGAVR 337
                                    10        20      | 30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300     | 310       320       330 |     
                                                     27-MSE                           60-MSE                       89-MSE                                                                                                                                                                                                                  306-MSE                   332-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Class II aaRS and biotin synthetases (165)

Superfamily: Class II aaRS and biotin synthetases (165)

Family: LplA-like (14)

Protein domain: Two-domain LplA, N-terminal domain (4)

Escherichia coli [TaxId: 562] (4)

1a	d1x2ha2	A:1-246
1b	d1x2hb2	B:1-246
1c	d1x2hc2	C:1-246

Fold: SufE/NifU (22)

Superfamily: SufE/NifU (22)

Family: SP1160 C-terminal domain-like (5)

Protein domain: Two-domain LplA, C-terminal domain (4)

Escherichia coli [TaxId: 562] (4)

2a	d1x2ha1	A:247-337
2b	d1x2hb1	B:247-337
2c	d1x2hc1	C:247-337

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: putative lipoate-protein ligase, domain 1 (7)

Homologous Superfamily: putative lipoate-protein ligase, domain 1 (7)

Escherichia coli. Organism_taxid: 562. (2)

1a	1x2hC01	C:1-249
1b	1x2hA01	A:1-249
1c	1x2hB01	B:1-249

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Lip_prot_lig_C] (2)

Family: Lip_prot_lig_C (2)

Escherichia coli (strain K12) (2)

1a	Lip_prot_lig_C-1x2hC01	C:247-332
1b	Lip_prot_lig_C-1x2hC02	C:247-332
1c	Lip_prot_lig_C-1x2hC03	C:247-332

Clan: tRNA_synt_II (64)

Family: BPL_LplA_LipB (10)

Escherichia coli (strain K12) (2)

2a	BPL_LplA_LipB-1x2hC04	C:45-157
2b	BPL_LplA_LipB-1x2hC05	C:45-157
2c	BPL_LplA_LipB-1x2hC06	C:45-157

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (LPLA_ECOLI | P32099)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0016979	lipoate-protein ligase activity	Catalysis of the formation of carbon-nitrogen bonds between lipoate (5-(1,2-dithiolan-3-yl)pentanoate) and a protein.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0006464	cellular protein modification process	The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
	GO:0018055	peptidyl-lysine lipoylation	The lipoylation of peptidyl-lysine to form peptidyl-N6-lipoyl-L-lysine.
	GO:0009249	protein lipoylation	The addition of a lipoyl group to an amino acid residue in a protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		LPA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Lys A:92 - Pro A:93	[ RasMol ]
		Lys B:92 - Pro B:93	[ RasMol ]
		Lys C:92 - Pro C:93	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1x2h
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	LPLA_ECOLI \| P32099
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	6.3.2.-
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	LPLA_ECOLI \| P32099
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	LPLA_ECOLI \| P32099	:	1x2g 3a7a 3a7r 4tvw 4tvy

1x2g	THE SAME PROTEIN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 17)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 3)

PROSITE Motifs (1, 3)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 6)

CATH Domains (1, 3)

Pfam Domains (2, 6)

Gene Ontology (9, 9)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File