4TM4 - JenaLib

Title :   KUTZNERIA SP. 744 ORNITHINE N-HYDROXYLASE, KTZI-FADOX-RED-NADP+-BR

Authors :   J. W. Setser, C. L. Drennan

Date :   30 May 14 (Deposition) - 17 Sep 14 (Release) - 10 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.63

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Hydroxylase, Flavin, Ornithine, Monooxygenase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. W. Setser, J. R. Heemstra, C. T. Walsh, C. L. Drennan
Crystallographic Evidence Of Drastic Conformational Changes In The Active Site Of A Flavin-Dependent N-Hydroxylase.
Biochemistry V. 53 6063 2014
PubMed-ID: 25184411 | Reference-DOI: 10.1021/BI500655Q

Compounds

Molecule 1 - KTZI
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21F
	Expression System Taxid	:	511693
	Gene	:	KTZI, KUTG_08917
	Organism Scientific	:	KUTZNERIA SP. 744
	Organism Taxid	:	345341
	Synonym	:	PEPTIDE MONOOXYGENASE

Structural Features

Chains, Units

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 39)

Asymmetric/Biological Unit (3, 39)

No.	Name	Count	Type	Full Name
1	BR	31	Ligand/Ion	BROMIDE ION
2	FDA	4	Ligand/Ion	DIHYDROFLAVINE-ADENINE DINUCLEOTIDE
3	NAP	4	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

Sites (35, 35)

Asymmetric Unit (35, 35)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:18 , GLY A:20 , PRO A:21 , ALA A:22 , PHE A:42 , GLU A:43 , ARG A:44 , TRP A:50 , HIS A:51 , MET A:54 , MET A:61 , GLN A:62 , ARG A:104 , SER A:126 , GLU A:127 , VAL A:128 , SER A:163 , THR A:164 , GLY A:165 , LEU A:166 , TYR A:346 , SER A:403 , LEU A:404 , LEU A:405 , NAP A:502 , HOH A:602 , HOH A:662	binding site for residue FDA A 501
02	AC2	SOFTWARE	LYS A:60 , GLN A:62 , ARG A:104 , PRO A:171 , GLY A:205 , GLY A:206 , GLY A:207 , GLN A:208 , SER A:209 , GLU A:212 , ILE A:229 , PRO A:231 , ASN A:275 , SER A:277 , HIS A:309 , VAL A:310 , ALA A:343 , THR A:344 , GLY A:345 , FDA A:501 , HOH A:624 , HOH A:626 , HOH A:628 , HOH A:629 , HOH A:632 , TYR D:270	binding site for residue NAP A 502
03	AC3	SOFTWARE	ALA A:58 , PHE A:216	binding site for residue BR A 503
04	AC4	SOFTWARE	SER A:64 , LYS A:67 , HIS B:98	binding site for residue BR A 504
05	AC5	SOFTWARE	ARG A:374 , TYR A:376 , ASN A:407 , THR A:410 , GLU A:414	binding site for residue BR A 506
06	AC6	SOFTWARE	GLY A:89 , LEU A:91	binding site for residue BR A 507
07	AC7	SOFTWARE	ARG A:153	binding site for residue BR A 508
08	AC8	SOFTWARE	HIS A:182 , HIS A:189	binding site for residue BR A 509
09	AC9	SOFTWARE	PHE A:179	binding site for residue BR A 510
10	AD1	SOFTWARE	TYR A:333 , ARG B:385	binding site for residue BR A 511
11	AD2	SOFTWARE	ARG A:272	binding site for residue BR A 512
12	AD3	SOFTWARE	GLY B:18 , GLY B:20 , PRO B:21 , ALA B:22 , PHE B:42 , GLU B:43 , ARG B:44 , TRP B:50 , HIS B:51 , MET B:54 , MET B:61 , GLN B:62 , SER B:126 , VAL B:128 , SER B:163 , THR B:164 , GLY B:165 , LEU B:166 , TYR B:346 , SER B:403 , LEU B:404 , LEU B:405 , NAP B:502 , HOH B:603 , HOH B:604 , HOH B:613 , HOH B:636 , HOH B:667 , HOH B:668	binding site for residue FDA B 501
13	AD4	SOFTWARE	LYS B:60 , GLN B:62 , ARG B:104 , PRO B:171 , GLY B:205 , GLY B:206 , GLY B:207 , GLN B:208 , SER B:209 , GLU B:212 , ILE B:229 , PRO B:231 , ASN B:275 , SER B:277 , HIS B:309 , VAL B:310 , ALA B:343 , THR B:344 , GLY B:345 , TYR B:346 , FDA B:501 , HOH B:608 , HOH B:609 , HOH B:628 , HOH B:647 , HOH B:666 , TYR C:270	binding site for residue NAP B 502
14	AD5	SOFTWARE	HIS A:98 , SER B:64 , ASN B:245	binding site for residue BR B 503
15	AD6	SOFTWARE	PRO B:57 , ALA B:58	binding site for residue BR B 504
16	AD7	SOFTWARE	GLY B:89 , LEU B:91 , VAL B:92	binding site for residue BR B 506
17	AD8	SOFTWARE	HIS B:182 , HIS B:189	binding site for residue BR B 507
18	AD9	SOFTWARE	LEU C:307	binding site for residue BR B 508
19	AE1	SOFTWARE	GLY C:18 , GLY C:20 , PRO C:21 , ALA C:22 , PHE C:42 , GLU C:43 , ARG C:44 , TRP C:50 , HIS C:51 , MET C:54 , MET C:61 , GLN C:62 , SER C:126 , VAL C:128 , SER C:163 , THR C:164 , GLY C:165 , LEU C:166 , TYR C:346 , SER C:403 , LEU C:404 , LEU C:405 , NAP C:502 , HOH C:608 , HOH C:609 , HOH C:615 , HOH C:625	binding site for residue FDA C 501
20	AE2	SOFTWARE	TYR B:270 , LYS C:60 , GLN C:62 , ARG C:104 , PRO C:171 , GLY C:205 , GLY C:206 , GLY C:207 , GLN C:208 , SER C:209 , GLU C:212 , PRO C:231 , ASN C:275 , SER C:277 , HIS C:309 , VAL C:310 , ALA C:343 , THR C:344 , GLY C:345 , TYR C:346 , FDA C:501 , HOH C:604 , HOH C:605 , HOH C:606 , HOH C:629 , HOH C:653 , HOH C:655	binding site for residue NAP C 502
21	AE3	SOFTWARE	PRO C:57 , ALA C:58	binding site for residue BR C 503
22	AE4	SOFTWARE	SER C:64 , LYS C:67 , HIS D:98	binding site for residue BR C 504
23	AE5	SOFTWARE	ARG C:374 , TYR C:376 , ASN C:407 , THR C:410	binding site for residue BR C 506
24	AE6	SOFTWARE	GLY C:89 , LEU C:91	binding site for residue BR C 507
25	AE7	SOFTWARE	HIS C:182 , HIS C:189	binding site for residue BR C 508
26	AE8	SOFTWARE	SER C:332 , ALA D:317	binding site for residue BR C 509
27	AE9	SOFTWARE	TYR C:333	binding site for residue BR C 510
28	AF1	SOFTWARE	GLY D:18 , GLY D:20 , PRO D:21 , ALA D:22 , PHE D:42 , GLU D:43 , ARG D:44 , TRP D:50 , HIS D:51 , MET D:54 , MET D:61 , GLN D:62 , ARG D:104 , VAL D:128 , SER D:163 , THR D:164 , GLY D:165 , LEU D:166 , TYR D:346 , SER D:403 , LEU D:404 , LEU D:405 , NAP D:502 , HOH D:603 , HOH D:604 , HOH D:663	binding site for residue FDA D 501
29	AF2	SOFTWARE	TYR A:270 , LYS D:60 , GLN D:62 , ARG D:104 , PRO D:171 , ALA D:204 , GLY D:205 , GLY D:206 , GLY D:207 , GLN D:208 , SER D:209 , GLU D:212 , ILE D:229 , PRO D:231 , ASN D:275 , SER D:277 , HIS D:309 , VAL D:310 , ALA D:343 , THR D:344 , GLY D:345 , TYR D:346 , FDA D:501 , HOH D:611 , HOH D:626 , HOH D:627 , HOH D:629 , HOH D:630	binding site for residue NAP D 502
30	AF3	SOFTWARE	GLY D:89 , LEU D:91 , VAL D:92	binding site for residue BR D 503
31	AF4	SOFTWARE	HIS C:98 , SER D:64 , LYS D:67 , ASN D:245	binding site for residue BR D 504
32	AF5	SOFTWARE	PRO D:57 , ALA D:58 , PHE D:216	binding site for residue BR D 506
33	AF6	SOFTWARE	TRP D:181 , HIS D:182 , ARG D:185 , HIS D:189	binding site for residue BR D 507
34	AF7	SOFTWARE	LEU D:307	binding site for residue BR D 508
35	AF8	SOFTWARE	LEU A:307 , ASP D:255	binding site for residue BR D 509

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:414
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee.eeee..hhhhhhhhhhhhhh.....eeee........hhhhh........................hhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhh........eeeeeee........eeeeee....eeeeee.eeee....ee...........eee..hhhhhhh..hhhhh.eeeee..hhhhhhhhhhhhhhh...eeeee...........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeee..eeeeeeeee..eeeeeeee....eeeeeee.eeee...ee...hhhhhhhhhhhh........................eeee................hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4tm4 A  10 PTHDVVGVGFGPANLSLAVALEESPAALTSAFFERRASISWHQGMLLPAAKMQVSFLKDLATFRNPASRFSFVSFLHERGRLVRFANNHDFFPTRREFHDYLEWAESKLAHEVSYDSEVTAIRPGPGRPVDSVLVDVSTPEATRTVEARNIVISTGLVPRMPAGVQSDEFVWHSSRFLDHFRDRDPRSLRRVAVAGGGQSAAEIVRFLHDNRPDTVVHAIMPSYGYVVADNTPFANQIFDPAAVDDYFDGSKQAKDAFWRYHRNTNYSVVDDEVIRDLYRRGYDDEVAGAPRLNFVNLAHVVGAKRIADDTRVTVYSMAREESYDLDVDVLVCATGYDPMDPGDLLGELAEHCVQDAEGRWQVDRDYRMVTTPDLRCGIYLQGGTEHTHGLSSSLLSNLATRSGEIVSSIERRK 423
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419

Chain B from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.eeee..hhhhhhhhhhhhhh.....eeee........hhhhh........................hhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhh........eeeeeee........eeeeee....eeeeee.eeee....ee...........eee..hhhhhhh..hhhhh.eeeee..hhhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeee..eeeeeeeee..eeeeeeee....eeeeeee.eeee...ee...hhhhhhhhhhhh........................eeee................hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tm4 B  10 PTHDVVGVGFGPANLSLAVALEESPAALTSAFFERRASISWHQGMLLPAAKMQVSFLKDLATFRNPASRFSFVSFLHERGRLVRFANNHDFFPTRREFHDYLEWAESKLAHEVSYDSEVTAIRPGPGRPVDSVLVDVSTPEATRTVEARNIVISTGLVPRMPAGVQSDEFVWHSSRFLDHFRDRDPRSLRRVAVAGGGQSAAEIVRFLHDNRPDTVVHAIMPSYGYVVADNTPFANQIFDPAAVDDYFDGSKQAKDAFWRYHRNTNYSVVDDEVIRDLYRRGYDDEVAGAPRLNFVNLAHVVGAKRIADDTRVTVYSMAREESYDLDVDVLVCATGYDPMDPGDLLGELAEHCVQDAEGRWQVDRDYRMVTTPDLRCGIYLQGGTEHTHGLSSSLLSNLATRSGEIVSSIERRKS 424
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419

Chain C from PDB  Type:PROTEIN  Length:414
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee.eeee..hhhhhhhhhhhhhh.....eeee........hhhhh........................hhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhh........eeeeeee........eeeeee....eeeeee.eeee....ee...........eee..hhhhhhh..hhhhh.eeeee..hhhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeee..eeeeeeeee..eeeeeeee....eeeeeee.eeee...ee...hhhhhhhhhhhh........................eeee................hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4tm4 C  10 PTHDVVGVGFGPANLSLAVALEESPAALTSAFFERRASISWHQGMLLPAAKMQVSFLKDLATFRNPASRFSFVSFLHERGRLVRFANNHDFFPTRREFHDYLEWAESKLAHEVSYDSEVTAIRPGPGRPVDSVLVDVSTPEATRTVEARNIVISTGLVPRMPAGVQSDEFVWHSSRFLDHFRDRDPRSLRRVAVAGGGQSAAEIVRFLHDNRPDTVVHAIMPSYGYVVADNTPFANQIFDPAAVDDYFDGSKQAKDAFWRYHRNTNYSVVDDEVIRDLYRRGYDDEVAGAPRLNFVNLAHVVGAKRIADDTRVTVYSMAREESYDLDVDVLVCATGYDPMDPGDLLGELAEHCVQDAEGRWQVDRDYRMVTTPDLRCGIYLQGGTEHTHGLSSSLLSNLATRSGEIVSSIERRK 423
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419

Chain D from PDB  Type:PROTEIN  Length:414
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee..hhhhhhhhhhhhhh.....eeee........hhhhh........................hhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhh........eeeeeee........eeeeee....eeeeeeeeeee....ee...........eee..hhhhhhh........eeeee..hhhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeee..eeeeeeeee..eeeeeeee....eeeeeee.eeee...ee..hhhhh..hhhhhh........................eeee................hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4tm4 D  10 PTHDVVGVGFGPANLSLAVALEESPAALTSAFFERRASISWHQGMLLPAAKMQVSFLKDLATFRNPASRFSFVSFLHERGRLVRFANNHDFFPTRREFHDYLEWAESKLAHEVSYDSEVTAIRPGPGRPVDSVLVDVSTPEATRTVEARNIVISTGLVPRMPAGVQSDEFVWHSSRFLDHFRDRDPRSLRRVAVAGGGQSAAEIVRFLHDNRPDTVVHAIMPSYGYVVADNTPFANQIFDPAAVDDYFDGSKQAKDAFWRYHRNTNYSVVDDEVIRDLYRRGYDDEVAGAPRLNFVNLAHVVGAKRIADDTRVTVYSMAREESYDLDVDVLVCATGYDPMDPGDLLGELAEHCVQDAEGRWQVDRDYRMVTTPDLRCGIYLQGGTEHTHGLSSSLLSNLATRSGEIVSSIERRK 423
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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