4TLX - JenaLib

Title :   KUTZNERIA SP. 744 ORNITHINE N-HYDROXYLASE, KTZI-FADRED-NADP+-L-ORN

Authors :   J. W. Setser, C. L. Drennan

Date :   30 May 14 (Deposition) - 17 Sep 14 (Release) - 10 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.23

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Hydroxylase, Flavin, Ornithine, Monooxygenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. W. Setser, J. R. Heemstra, C. T. Walsh, C. L. Drennan
Crystallographic Evidence Of Drastic Conformational Changes In The Active Site Of A Flavin-Dependent N-Hydroxylase.
Biochemistry V. 53 6063 2014
PubMed-ID: 25184411 | Reference-DOI: 10.1021/BI500655Q

Compounds

Molecule 1 - KTZI
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Gene	:	KTZI, KUTG_08917
	Organism Scientific	:	KUTZNERIA SP. 744
	Organism Taxid	:	345341
	Synonym	:	PEPTIDE MONOOXYGENASE

Structural Features

Chains, Units

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (4, 21)

Asymmetric/Biological Unit (4, 21)

No.	Name	Count	Type	Full Name
1	FDA	4	Ligand/Ion	DIHYDROFLAVINE-ADENINE DINUCLEOTIDE
2	K	9	Ligand/Ion	POTASSIUM ION
3	NAP	4	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4	ORN	4	Ligand/Ion	L-ORNITHINE

Sites (21, 21)

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:18 , PHE A:19 , GLY A:20 , PRO A:21 , ALA A:22 , PHE A:42 , GLU A:43 , ARG A:44 , TRP A:50 , HIS A:51 , MET A:54 , MET A:61 , GLN A:62 , SER A:126 , GLU A:127 , VAL A:128 , SER A:163 , THR A:164 , GLY A:165 , LEU A:166 , TYR A:346 , SER A:403 , LEU A:404 , LEU A:405 , NAP A:502 , HOH A:608 , HOH A:610 , HOH A:611 , HOH A:612 , HOH A:613 , HOH A:614 , HOH A:643 , HOH A:644 , HOH A:767	binding site for residue FDA A 501
02	AC2	SOFTWARE	LYS A:60 , GLN A:62 , ARG A:104 , PRO A:171 , GLY A:205 , GLY A:206 , GLY A:207 , GLN A:208 , SER A:209 , GLU A:212 , ILE A:229 , PRO A:231 , ASN A:275 , SER A:277 , HIS A:309 , VAL A:310 , ALA A:343 , THR A:344 , GLY A:345 , TYR A:346 , FDA A:501 , HOH A:623 , HOH A:625 , HOH A:648 , HOH A:649 , HOH A:682 , HOH A:694 , HOH A:695 , HOH A:696 , ARG D:269 , TYR D:270	binding site for residue NAP A 502
03	AC3	SOFTWARE	GLN A:62 , VAL A:63 , LYS A:67 , ASN A:245 , PHE A:248 , ASN A:275 , SER A:406 , HOH A:666 , HOH A:667 , HOH A:668 , HOH A:766 , HOH A:767	binding site for residue ORN A 503
04	AC4	SOFTWARE	LEU A:30 , GLU A:31 , SER A:33 , ALA A:35	binding site for residue K A 504
05	AC5	SOFTWARE	GLU A:115 , SER A:116 , LEU A:118 , HIS A:120 , HOH A:743	binding site for residue K A 505
06	AC6	SOFTWARE	SER A:116 , LEU A:118	binding site for residue K A 506
07	AC7	SOFTWARE	GLY B:18 , GLY B:20 , PRO B:21 , ALA B:22 , PHE B:42 , GLU B:43 , ARG B:44 , TRP B:50 , HIS B:51 , MET B:61 , GLN B:62 , SER B:126 , VAL B:128 , SER B:163 , THR B:164 , GLY B:165 , LEU B:166 , TYR B:346 , SER B:403 , LEU B:404 , LEU B:405 , NAP B:502 , HOH B:624 , HOH B:627 , HOH B:628 , HOH B:638 , HOH B:661	binding site for residue FDA B 501
08	AC8	SOFTWARE	LYS B:60 , GLN B:62 , ARG B:104 , PRO B:171 , GLY B:205 , GLY B:206 , GLY B:207 , GLN B:208 , SER B:209 , GLU B:212 , PRO B:231 , ASN B:275 , SER B:277 , HIS B:309 , VAL B:310 , ALA B:343 , THR B:344 , GLY B:345 , TYR B:346 , FDA B:501 , ORN B:503 , HOH B:614 , HOH B:615 , HOH B:671 , HOH B:672 , HOH B:674 , HOH B:697 , HOH B:698 , HOH B:699 , HOH B:744 , ARG C:269 , TYR C:270	binding site for residue NAP B 502
09	AC9	SOFTWARE	GLN B:62 , VAL B:63 , LYS B:67 , ASN B:245 , PHE B:248 , ASN B:275 , SER B:406 , NAP B:502 , HOH B:611 , HOH B:612 , HOH B:613	binding site for residue ORN B 503
10	AD1	SOFTWARE	LEU B:30 , GLU B:31 , SER B:33 , ALA B:35	binding site for residue K B 504
11	AD2	SOFTWARE	GLU B:115 , SER B:116 , LEU B:118 , HIS B:120 , GLU B:121	binding site for residue K B 505
12	AD3	SOFTWARE	GLY C:18 , GLY C:20 , PRO C:21 , ALA C:22 , PHE C:42 , GLU C:43 , ARG C:44 , TRP C:50 , HIS C:51 , MET C:61 , GLN C:62 , SER C:126 , GLU C:127 , VAL C:128 , SER C:163 , THR C:164 , GLY C:165 , LEU C:166 , TYR C:346 , SER C:403 , LEU C:404 , LEU C:405 , NAP C:502 , HOH C:615 , HOH C:628 , HOH C:629 , HOH C:632 , HOH C:694 , HOH C:710 , HOH C:716 , HOH C:720	binding site for residue FDA C 501
13	AD4	SOFTWARE	TYR B:270 , LYS C:60 , GLN C:62 , ARG C:104 , PRO C:171 , GLY C:205 , GLY C:206 , GLY C:207 , GLN C:208 , SER C:209 , GLU C:212 , ILE C:229 , PRO C:231 , ASN C:275 , SER C:277 , HIS C:309 , VAL C:310 , ALA C:343 , THR C:344 , GLY C:345 , FDA C:501 , ORN C:503 , HOH C:609 , HOH C:611 , HOH C:612 , HOH C:617 , HOH C:658 , HOH C:659 , HOH C:669 , HOH C:684 , HOH C:720	binding site for residue NAP C 502
14	AD5	SOFTWARE	GLN C:62 , VAL C:63 , LYS C:67 , ASN C:245 , PHE C:248 , ASN C:275 , SER C:406 , NAP C:502 , HOH C:641 , HOH C:642 , HOH C:644 , HOH C:697	binding site for residue ORN C 503
15	AD6	SOFTWARE	LEU C:30 , GLU C:31 , SER C:33 , ALA C:35	binding site for residue K C 504
16	AD7	SOFTWARE	GLU C:115 , SER C:116 , LEU C:118 , HIS C:120 , GLU C:121	binding site for residue K C 505
17	AD8	SOFTWARE	GLY D:18 , PHE D:19 , GLY D:20 , PRO D:21 , ALA D:22 , PHE D:42 , GLU D:43 , ARG D:44 , TRP D:50 , HIS D:51 , MET D:61 , GLN D:62 , SER D:126 , VAL D:128 , SER D:163 , THR D:164 , GLY D:165 , LEU D:166 , TYR D:346 , SER D:403 , LEU D:404 , LEU D:405 , NAP D:502 , HOH D:636 , HOH D:637 , HOH D:638 , HOH D:639 , HOH D:640 , HOH D:644 , HOH D:717 , HOH D:734 , HOH D:745	binding site for residue FDA D 501
18	AD9	SOFTWARE	ARG A:269 , TYR A:270 , LYS D:60 , GLN D:62 , ARG D:104 , PRO D:171 , GLY D:205 , GLY D:206 , GLY D:207 , GLN D:208 , SER D:209 , GLU D:212 , ILE D:229 , PRO D:231 , ASN D:275 , SER D:277 , HIS D:309 , VAL D:310 , ALA D:343 , THR D:344 , GLY D:345 , TYR D:346 , FDA D:501 , HOH D:610 , HOH D:611 , HOH D:629 , HOH D:641 , HOH D:655 , HOH D:656 , HOH D:657 , HOH D:670 , HOH D:734	binding site for residue NAP D 502
19	AE1	SOFTWARE	GLN D:62 , VAL D:63 , LYS D:67 , ASN D:245 , PHE D:248 , ASN D:275 , SER D:406 , HOH D:624 , HOH D:625 , HOH D:626 , HOH D:734	binding site for residue ORN D 503
20	AE2	SOFTWARE	LEU D:30 , GLU D:31 , SER D:33 , ALA D:35	binding site for residue K D 504
21	AE3	SOFTWARE	GLU D:115 , LEU D:118 , HIS D:120 , GLU D:121	binding site for residue K D 505

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.eeee..hhhhhhhhhhhhhh.....eeee........hhhhh........................hhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhh........eeeeeee........eeeeee....eeeeee.eeee....ee...........eee..hhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhh...eeeeee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeeee.eeeeeeeee..eeeeeeee....eeeeeee.eeee...ee...hhhhhhhhhhhh........................eeee................hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tlx A  10 PTHDVVGVGFGPANLSLAVALEESPAALTSAFFERRASISWHQGMLLPAAKMQVSFLKDLATFRNPASRFSFVSFLHERGRLVRFANNHDFFPTRREFHDYLEWAESKLAHEVSYDSEVTAIRPGPGRPVDSVLVDVSTPEATRTVEARNIVISTGLVPRMPAGVQSDEFVWHSSRFLDHFRDRDPRSLRRVAVAGGGQSAAEIVRFLHDNRPDTVVHAIMPSYGYVVADNTPFANQIFDPAAVDDYFDGSKQAKDAFWRYHRNTNYSVVDDEVIRDLYRRGYDDEVAGAPRLNFVNLAHVVGAKRIADDTRVTVYSMAREESYDLDVDVLVCATGYDPMDPGDLLGELAEHCVQDAEGRWQVDRDYRMVTTPDLRCGIYLQGGTEHTHGLSSSLLSNLATRSGEIVSSIERRKS 424
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419

Chain B from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.eeee..hhhhhhhhhhhhhh.....eeee........hhhhh........................hhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhh........eeeeeee........eeeeee....eeeeee.eeee....ee...........eee..hhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhh...eeeee...........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeee..eeeeeeeee..eeeeeeee....eeeeeee.eeee...ee...hhhhhhhhhhhh........................eeee...hhhhhh.......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tlx B  10 PTHDVVGVGFGPANLSLAVALEESPAALTSAFFERRASISWHQGMLLPAAKMQVSFLKDLATFRNPASRFSFVSFLHERGRLVRFANNHDFFPTRREFHDYLEWAESKLAHEVSYDSEVTAIRPGPGRPVDSVLVDVSTPEATRTVEARNIVISTGLVPRMPAGVQSDEFVWHSSRFLDHFRDRDPRSLRRVAVAGGGQSAAEIVRFLHDNRPDTVVHAIMPSYGYVVADNTPFANQIFDPAAVDDYFDGSKQAKDAFWRYHRNTNYSVVDDEVIRDLYRRGYDDEVAGAPRLNFVNLAHVVGAKRIADDTRVTVYSMAREESYDLDVDVLVCATGYDPMDPGDLLGELAEHCVQDAEGRWQVDRDYRMVTTPDLRCGIYLQGGTEHTHGLSSSLLSNLATRSGEIVSSIERRKS 424
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419

Chain C from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.eeee..hhhhhhhhhhhhhh.....eeee........hhhhh........................hhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhh........eeeeeee........eeeeee....eeeeee.eeee....ee...........eee..hhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...eeee..eeeeeeeee..eeeeeeee....eeeeeee.eeee...ee...hhhhhhhhhhhh........................eeee...hhhhhh.......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tlx C  10 PTHDVVGVGFGPANLSLAVALEESPAALTSAFFERRASISWHQGMLLPAAKMQVSFLKDLATFRNPASRFSFVSFLHERGRLVRFANNHDFFPTRREFHDYLEWAESKLAHEVSYDSEVTAIRPGPGRPVDSVLVDVSTPEATRTVEARNIVISTGLVPRMPAGVQSDEFVWHSSRFLDHFRDRDPRSLRRVAVAGGGQSAAEIVRFLHDNRPDTVVHAIMPSYGYVVADNTPFANQIFDPAAVDDYFDGSKQAKDAFWRYHRNTNYSVVDDEVIRDLYRRGYDDEVAGAPRLNFVNLAHVVGAKRIADDTRVTVYSMAREESYDLDVDVLVCATGYDPMDPGDLLGELAEHCVQDAEGRWQVDRDYRMVTTPDLRCGIYLQGGTEHTHGLSSSLLSNLATRSGEIVSSIERRKS 424
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419

Chain D from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.eeee..hhhhhhhhhhhhhh.....eeee........hhhhh........................hhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhh........eeeeeee........eeeeee....eeeeee.eeee....ee...........eee..hhhhhhh..hhhhh.eeeee..hhhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeee..eeeeeeeee..eeeeeeee....eeeeeee.eeee...ee...hhhhhhhhhhhh........................eeee................hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tlx D  10 PTHDVVGVGFGPANLSLAVALEESPAALTSAFFERRASISWHQGMLLPAAKMQVSFLKDLATFRNPASRFSFVSFLHERGRLVRFANNHDFFPTRREFHDYLEWAESKLAHEVSYDSEVTAIRPGPGRPVDSVLVDVSTPEATRTVEARNIVISTGLVPRMPAGVQSDEFVWHSSRFLDHFRDRDPRSLRRVAVAGGGQSAAEIVRFLHDNRPDTVVHAIMPSYGYVVADNTPFANQIFDPAAVDDYFDGSKQAKDAFWRYHRNTNYSVVDDEVIRDLYRRGYDDEVAGAPRLNFVNLAHVVGAKRIADDTRVTVYSMAREESYDLDVDVLVCATGYDPMDPGDLLGELAEHCVQDAEGRWQVDRDYRMVTTPDLRCGIYLQGGTEHTHGLSSSLLSNLATRSGEIVSSIERRKS 424
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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