4S2V - JenaLib

Title :   E. COLI RPPH STRUCTURE, KI SOAK

Authors :   N. Vasilyev, A. Serganov

Date :   23 Jan 15 (Deposition) - 11 Feb 15 (Release) - 06 May 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym./Biol. Unit : A

Keywords :   Nudix Hydrolase, Rna Pyrophosphohydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Vasilyev, A. Serganov
Structures Of Rna Complexes With The Escherichia Coli Rna Pyrophosphohydrolase Rpph Unveil The Basis For Specific 5'-End-Dependent Mrna Decay.
J. Biol. Chem. V. 290 9487 2015
PubMed-ID: 25657011 | Reference-DOI: 10.1074/JBC.M114.634824

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 29)

Sites (25, 25)

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:97 , IOD A:202 , HOH A:316	BINDING SITE FOR RESIDUE IOD A 201
02	AC2	SOFTWARE	IOD A:201	BINDING SITE FOR RESIDUE IOD A 202
03	AC3	SOFTWARE	ALA A:47	BINDING SITE FOR RESIDUE IOD A 203
04	AC4	SOFTWARE	ARG A:27 , GLY A:30 , GLN A:31	BINDING SITE FOR RESIDUE IOD A 205
05	AC5	SOFTWARE	ASN A:74	BINDING SITE FOR RESIDUE IOD A 206
06	AC6	SOFTWARE	LYS A:79	BINDING SITE FOR RESIDUE IOD A 208
07	AC7	SOFTWARE	TYR A:8 , IOD A:210	BINDING SITE FOR RESIDUE IOD A 209
08	AC8	SOFTWARE	IOD A:209	BINDING SITE FOR RESIDUE IOD A 210
09	AC9	SOFTWARE	ASP A:143 , ARG A:147 , HOH A:320 , HOH A:405	BINDING SITE FOR RESIDUE IOD A 211
10	BC1	SOFTWARE	ARG A:63 , GLN A:136	BINDING SITE FOR RESIDUE IOD A 212
11	BC2	SOFTWARE	GLN A:136 , HOH A:332	BINDING SITE FOR RESIDUE IOD A 213
12	BC3	SOFTWARE	ARG A:63 , TYR A:132	BINDING SITE FOR RESIDUE IOD A 214
13	BC4	SOFTWARE	ARG A:53 , SER A:129	BINDING SITE FOR RESIDUE IOD A 215
14	BC5	SOFTWARE	ASN A:42 , ARG A:83	BINDING SITE FOR RESIDUE IOD A 216
15	BC6	SOFTWARE	GLN A:20	BINDING SITE FOR RESIDUE IOD A 217
16	BC7	SOFTWARE	ASN A:18 , ARG A:19	BINDING SITE FOR RESIDUE IOD A 218
17	BC8	SOFTWARE	ILE A:68	BINDING SITE FOR RESIDUE IOD A 219
18	BC9	SOFTWARE	SER A:139 , ARG A:142 , HOH A:407	BINDING SITE FOR RESIDUE IOD A 220
19	CC1	SOFTWARE	HIS A:32	BINDING SITE FOR RESIDUE IOD A 221
20	CC2	SOFTWARE	ARG A:86 , ARG A:146	BINDING SITE FOR RESIDUE IOD A 223
21	CC3	SOFTWARE	IOD A:225 , ACT A:229 , HOH A:342	BINDING SITE FOR RESIDUE IOD A 224
22	CC4	SOFTWARE	ARG A:9 , IOD A:224	BINDING SITE FOR RESIDUE IOD A 225
23	CC5	SOFTWARE	TRP A:34 , GLN A:35 , VAL A:138 , HOH A:332	BINDING SITE FOR RESIDUE IOD A 227
24	CC6	SOFTWARE	GLN A:38 , GLU A:54 , GLU A:58 , HOH A:330 , HOH A:343 , HOH A:404	BINDING SITE FOR RESIDUE CA A 228
25	CC7	SOFTWARE	ARG A:86 , LYS A:150 , IOD A:224	BINDING SITE FOR RESIDUE ACT A 229

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeee....eeeeee......ee..eee.....hhhhhhhhhhhhhhh.hhh.eeeeee....eeee.hhhhh.........eeeeeeeeeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4s2v A   1 SMIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVM 157
                                    10        20        30        40        50        60        70        80        90       100     ||128       138       148         
                                                                                                                                   106|                                
                                                                                                                                    125

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

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		Lys A:90 - Pro A:91	[ RasMol ]

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