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4S2V
Asym. Unit
Info
Asym.Unit (59 KB)
Biol.Unit 1 (54 KB)
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(1)
Title
:
E. COLI RPPH STRUCTURE, KI SOAK
Authors
:
N. Vasilyev, A. Serganov
Date
:
23 Jan 15 (Deposition) - 11 Feb 15 (Release) - 06 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Nudix Hydrolase, Rna Pyrophosphohydrolase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Vasilyev, A. Serganov
Structures Of Rna Complexes With The Escherichia Coli Rna Pyrophosphohydrolase Rpph Unveil The Basis For Specific 5'-End-Dependent Mrna Decay.
J. Biol. Chem. V. 290 9487 2015
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Hetero Components
(3, 29)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CALCIUM ION (CAa)
3a: IODIDE ION (IODa)
3aa: IODIDE ION (IODaa)
3b: IODIDE ION (IODb)
3c: IODIDE ION (IODc)
3d: IODIDE ION (IODd)
3e: IODIDE ION (IODe)
3f: IODIDE ION (IODf)
3g: IODIDE ION (IODg)
3h: IODIDE ION (IODh)
3i: IODIDE ION (IODi)
3j: IODIDE ION (IODj)
3k: IODIDE ION (IODk)
3l: IODIDE ION (IODl)
3m: IODIDE ION (IODm)
3n: IODIDE ION (IODn)
3o: IODIDE ION (IODo)
3p: IODIDE ION (IODp)
3q: IODIDE ION (IODq)
3r: IODIDE ION (IODr)
3s: IODIDE ION (IODs)
3t: IODIDE ION (IODt)
3u: IODIDE ION (IODu)
3v: IODIDE ION (IODv)
3w: IODIDE ION (IODw)
3x: IODIDE ION (IODx)
3y: IODIDE ION (IODy)
3z: IODIDE ION (IODz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
1
Ligand/Ion
CALCIUM ION
3
IOD
27
Ligand/Ion
IODIDE ION
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:97 , IOD A:202 , HOH A:316
BINDING SITE FOR RESIDUE IOD A 201
02
AC2
SOFTWARE
IOD A:201
BINDING SITE FOR RESIDUE IOD A 202
03
AC3
SOFTWARE
ALA A:47
BINDING SITE FOR RESIDUE IOD A 203
04
AC4
SOFTWARE
ARG A:27 , GLY A:30 , GLN A:31
BINDING SITE FOR RESIDUE IOD A 205
05
AC5
SOFTWARE
ASN A:74
BINDING SITE FOR RESIDUE IOD A 206
06
AC6
SOFTWARE
LYS A:79
BINDING SITE FOR RESIDUE IOD A 208
07
AC7
SOFTWARE
TYR A:8 , IOD A:210
BINDING SITE FOR RESIDUE IOD A 209
08
AC8
SOFTWARE
IOD A:209
BINDING SITE FOR RESIDUE IOD A 210
09
AC9
SOFTWARE
ASP A:143 , ARG A:147 , HOH A:320 , HOH A:405
BINDING SITE FOR RESIDUE IOD A 211
10
BC1
SOFTWARE
ARG A:63 , GLN A:136
BINDING SITE FOR RESIDUE IOD A 212
11
BC2
SOFTWARE
GLN A:136 , HOH A:332
BINDING SITE FOR RESIDUE IOD A 213
12
BC3
SOFTWARE
ARG A:63 , TYR A:132
BINDING SITE FOR RESIDUE IOD A 214
13
BC4
SOFTWARE
ARG A:53 , SER A:129
BINDING SITE FOR RESIDUE IOD A 215
14
BC5
SOFTWARE
ASN A:42 , ARG A:83
BINDING SITE FOR RESIDUE IOD A 216
15
BC6
SOFTWARE
GLN A:20
BINDING SITE FOR RESIDUE IOD A 217
16
BC7
SOFTWARE
ASN A:18 , ARG A:19
BINDING SITE FOR RESIDUE IOD A 218
17
BC8
SOFTWARE
ILE A:68
BINDING SITE FOR RESIDUE IOD A 219
18
BC9
SOFTWARE
SER A:139 , ARG A:142 , HOH A:407
BINDING SITE FOR RESIDUE IOD A 220
19
CC1
SOFTWARE
HIS A:32
BINDING SITE FOR RESIDUE IOD A 221
20
CC2
SOFTWARE
ARG A:86 , ARG A:146
BINDING SITE FOR RESIDUE IOD A 223
21
CC3
SOFTWARE
IOD A:225 , ACT A:229 , HOH A:342
BINDING SITE FOR RESIDUE IOD A 224
22
CC4
SOFTWARE
ARG A:9 , IOD A:224
BINDING SITE FOR RESIDUE IOD A 225
23
CC5
SOFTWARE
TRP A:34 , GLN A:35 , VAL A:138 , HOH A:332
BINDING SITE FOR RESIDUE IOD A 227
24
CC6
SOFTWARE
GLN A:38 , GLU A:54 , GLU A:58 , HOH A:330 , HOH A:343 , HOH A:404
BINDING SITE FOR RESIDUE CA A 228
25
CC7
SOFTWARE
ARG A:86 , LYS A:150 , IOD A:224
BINDING SITE FOR RESIDUE ACT A 229
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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