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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PSEUDOMONAS PHAGE PHI297 TAILSPIKE GP61
 
Authors :  C. Browning, L. V. Sycheva, M. M. Shneider, P. G. Leiman
Date :  18 Nov 14  (Deposition) - 18 Nov 15  (Release) - 18 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.52
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Beta-Helix, Tailspike, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Browning, L. V. Sycheva, M. M. Shneider, P. G. Leiman
Crystal Structure Of The Pseudomonas Phage Phi297 Tailspike Gp61
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TAILSPIKE GP27
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTSL, PET-23 DERIVATIVE WITH SLYD LEADER
    Expression System Strain: B834/DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PHI297_00061
    Organism Scientific: PSEUDOMONAS PHAGE PHI297
    Organism Taxid: 1129145

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 36)

Asymmetric/Biological Unit (4, 36)
No.NameCountTypeFull Name
1ACT7Ligand/IonACETATE ION
2CA6Ligand/IonCALCIUM ION
3EDO13Ligand/Ion1,2-ETHANEDIOL
4NA10Ligand/IonSODIUM ION

(-) Sites  (34, 34)

Asymmetric Unit (34, 34)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:383 , ASN A:410 , ASP A:411 , GLU A:412 , HOH A:998 , HOH A:1010 , HOH A:1024BINDING SITE FOR RESIDUE CA A 801
02AC2SOFTWAREASP A:464 , ILE A:465 , ASP A:468 , SER A:510 , HOH A:1043 , HOH A:1067 , HOH A:1126BINDING SITE FOR RESIDUE CA A 802
03AC3SOFTWAREHOH C:1881BINDING SITE FOR RESIDUE NA A 803
04AC4SOFTWAREASP A:336 , HOH A:1407 , HOH A:1862BINDING SITE FOR RESIDUE NA A 804
05AC5SOFTWAREARG A:301 , ASP A:302BINDING SITE FOR RESIDUE NA A 806
06AC6SOFTWAREASP A:280 , ARG A:341 , NA A:808 , HOH A:1831BINDING SITE FOR RESIDUE NA A 807
07AC7SOFTWAREARG A:341 , NA A:807BINDING SITE FOR RESIDUE NA A 808
08AC8SOFTWAREASP A:232 , GLY A:233 , TYR A:234 , ALA A:235 , ILE B:227 , ARG B:344 , HOH B:1014BINDING SITE FOR RESIDUE EDO A 809
09AC9SOFTWARETHR A:664 , SER A:666 , THR A:668 , ALA A:670 , ASP C:336 , EDO C:805BINDING SITE FOR RESIDUE EDO A 810
10BC1SOFTWAREHIS A:184 , THR A:186 , ARG A:219 , HOH A:1005 , HOH A:1231 , HOH A:1259 , GLN B:615BINDING SITE FOR RESIDUE EDO A 811
11BC2SOFTWARELYS A:155 , ASP A:156 , HOH A:1522 , HOH A:1688BINDING SITE FOR RESIDUE EDO A 812
12BC3SOFTWAREALA A:359 , ARG A:383 , ASN A:410 , HOH A:998 , HOH A:1010 , HOH A:1124 , HOH A:1817BINDING SITE FOR RESIDUE ACT A 813
13BC4SOFTWAREARG B:383 , ASN B:410 , ASP B:411 , GLU B:412 , HOH B:956 , HOH B:966 , HOH B:1024BINDING SITE FOR RESIDUE CA B 801
14BC5SOFTWAREASP B:464 , ILE B:465 , ASP B:468 , SER B:510 , HOH B:1047 , HOH B:1124 , HOH B:1133BINDING SITE FOR RESIDUE CA B 802
15BC6SOFTWARETYR B:711BINDING SITE FOR RESIDUE NA B 803
16BC7SOFTWAREASP B:232 , GLY B:233 , TYR B:234 , ALA B:235 , HOH B:1071 , ASP C:226 , ILE C:227 , ARG C:344BINDING SITE FOR RESIDUE EDO B 805
17BC8SOFTWAREGLY B:551 , THR B:552 , SER B:553 , ARG B:584 , HOH B:931 , HOH B:1585 , HOH B:1617BINDING SITE FOR RESIDUE EDO B 806
18BC9SOFTWAREALA B:408 , VAL B:409 , ARG B:434 , ILE B:465 , HOH B:1002 , HOH B:1246 , HOH B:1964BINDING SITE FOR RESIDUE EDO B 807
19CC1SOFTWAREALA B:359 , ARG B:383 , ASN B:410 , HOH B:966 , HOH B:1024 , HOH B:1167 , HOH B:1886BINDING SITE FOR RESIDUE ACT B 808
20CC2SOFTWARESER B:333 , GLU B:334 , ASP B:336 , HOH B:1790BINDING SITE FOR RESIDUE ACT B 809
21CC3SOFTWAREALA B:673 , GLN B:674 , THR B:675 , HOH B:1406BINDING SITE FOR RESIDUE ACT B 810
22CC4SOFTWAREARG C:383 , ASN C:410 , ASP C:411 , GLU C:412 , HOH C:1024 , HOH C:1066 , HOH C:1098BINDING SITE FOR RESIDUE CA C 801
23CC5SOFTWAREASP C:464 , ILE C:465 , ASP C:468 , SER C:510 , HOH C:1007 , HOH C:1069 , HOH C:1184BINDING SITE FOR RESIDUE CA C 802
24CC6SOFTWAREHOH A:918 , HOH A:1625 , MET C:601BINDING SITE FOR RESIDUE NA C 803
25CC7SOFTWARELEU C:175 , ALA C:176BINDING SITE FOR RESIDUE NA C 804
26CC8SOFTWAREALA A:670 , TYR A:711 , EDO A:810 , HOH A:1457 , GLN C:258 , ASP C:336 , HOH C:1151BINDING SITE FOR RESIDUE EDO C 805
27CC9SOFTWAREASP A:226 , ILE A:227 , ARG A:344 , ASP C:232 , GLY C:233 , TYR C:234 , ALA C:235 , HOH C:1035BINDING SITE FOR RESIDUE EDO C 806
28DC1SOFTWAREHOH C:1518 , HOH C:1596 , HOH C:1825BINDING SITE FOR RESIDUE EDO C 807
29DC2SOFTWAREASP C:156 , TYR C:157 , HOH C:1737BINDING SITE FOR RESIDUE EDO C 808
30DC3SOFTWAREASP C:300 , GLY C:551 , THR C:552 , SER C:553 , ARG C:584 , HOH C:967 , HOH C:1421BINDING SITE FOR RESIDUE EDO C 809
31DC4SOFTWAREALA C:408 , VAL C:409 , ARG C:434 , HOH C:1079 , HOH C:1158BINDING SITE FOR RESIDUE EDO C 810
32DC5SOFTWAREALA C:359 , ARG C:383 , ASN C:410 , HOH C:1024 , HOH C:1098 , HOH C:1164 , HOH C:1805BINDING SITE FOR RESIDUE ACT C 811
33DC6SOFTWAREHOH A:1279 , HOH A:1413 , ALA C:444 , VAL C:445 , HOH C:1083BINDING SITE FOR RESIDUE ACT C 812
34DC7SOFTWAREALA C:673 , GLN C:674 , THR C:675 , HOH C:1434BINDING SITE FOR RESIDUE ACT C 813

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RU5)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Arg A:489 -Asn A:490
2Arg B:489 -Asn B:490
3Arg C:489 -Asn C:490

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RU5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RU5)

(-) Exons   (0, 0)

(no "Exon" information available for 4RU5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:600
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhh........hhhhh..hhhhhhhhh........hhhhhhhhhhhhh............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ru5 A 147 RLNDTANVKDYGAIADGAYHPLSERFATLAEAQAVYPHATALTDSIDWAAYQAAINSGAPHVHAPGGHYVMNRGTLAERDIRYTGDGYATRVDFSLADGPGSCMLTQGELVQIGDLSVSVVKGARTLTFAAAPDLAPGDVVIVYNPANGSWLADRDPYRAGEMWKVHSVSGSTVTIYGNSSSVYLFSEVDVYRMRGVRVSVDQMHFSPSDTYAIAPFRVVFGDGVKVSNYYASDVTRYTGLEVERCFDVSINAVSSPNRSPAVNDEYGITISNCHNFSVYGGYAAATRHAVALGGMDAVCCVPNRNGLIYGMHIEGIDIDSDIGAGDMHGNADKITYDNCEFRNGVILQGRDATVRNSTIYGVSSVSGEALYGTEVYGGTYTIENNRFISYGNGASFGIIHISPGTSQREALLIIARNNTFELPNATGSTKVLFLRGRNSPLPCSVNIDGMHVHMAPVAMQCFLFADDQVAATLNSNYLIIDGVYGPSGTYLLYPTSKNAAIPTRQMHQSGAVNVTTTASATVAAPAQTIRYPYSKIPNVSVQVSSQSGGGQSAIGSITPVAIAYNVQPNSIRPAIMAPSGSFAAGGSARLHWSASLDDI 746
                                   156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746


Chain B from PDB  Type:PROTEIN  Length:600
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....................hhhhh..hhhhhhhhh........hhhhhhhhhhhhh............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ru5 B 147 RLNDTANVKDYGAIADGAYHPLSERFATLAEAQAVYPHATALTDSIDWAAYQAAINSGAPHVHAPGGHYVMNRGTLAERDIRYTGDGYATRVDFSLADGPGSCMLTQGELVQIGDLSVSVVKGARTLTFAAAPDLAPGDVVIVYNPANGSWLADRDPYRAGEMWKVHSVSGSTVTIYGNSSSVYLFSEVDVYRMRGVRVSVDQMHFSPSDTYAIAPFRVVFGDGVKVSNYYASDVTRYTGLEVERCFDVSINAVSSPNRSPAVNDEYGITISNCHNFSVYGGYAAATRHAVALGGMDAVCCVPNRNGLIYGMHIEGIDIDSDIGAGDMHGNADKITYDNCEFRNGVILQGRDATVRNSTIYGVSSVSGEALYGTEVYGGTYTIENNRFISYGNGASFGIIHISPGTSQREALLIIARNNTFELPNATGSTKVLFLRGRNSPLPCSVNIDGMHVHMAPVAMQCFLFADDQVAATLNSNYLIIDGVYGPSGTYLLYPTSKNAAIPTRQMHQSGAVNVTTTASATVAAPAQTIRYPYSKIPNVSVQVSSQSGGGQSAIGSITPVAIAYNVQPNSIRPAIMAPSGSFAAGGSARLHWSASLDDI 746
                                   156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746


Chain C from PDB  Type:PROTEIN  Length:602
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhh........hhhhh..hhhhhhhhh........hhhhhhhhhhhhh............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ru5 C 145 ADRLNDTANVKDYGAIADGAYHPLSERFATLAEAQAVYPHATALTDSIDWAAYQAAINSGAPHVHAPGGHYVMNRGTLAERDIRYTGDGYATRVDFSLADGPGSCMLTQGELVQIGDLSVSVVKGARTLTFAAAPDLAPGDVVIVYNPANGSWLADRDPYRAGEMWKVHSVSGSTVTIYGNSSSVYLFSEVDVYRMRGVRVSVDQMHFSPSDTYAIAPFRVVFGDGVKVSNYYASDVTRYTGLEVERCFDVSINAVSSPNRSPAVNDEYGITISNCHNFSVYGGYAAATRHAVALGGMDAVCCVPNRNGLIYGMHIEGIDIDSDIGAGDMHGNADKITYDNCEFRNGVILQGRDATVRNSTIYGVSSVSGEALYGTEVYGGTYTIENNRFISYGNGASFGIIHISPGTSQREALLIIARNNTFELPNATGSTKVLFLRGRNSPLPCSVNIDGMHVHMAPVAMQCFLFADDQVAATLNSNYLIIDGVYGPSGTYLLYPTSKNAAIPTRQMHQSGAVNVTTTASATVAAPAQTIRYPYSKIPNVSVQVSSQSGGGQSAIGSITPVAIAYNVQPNSIRPAIMAPSGSFAAGGSARLHWSASLDDI 746
                                   154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RU5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RU5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RU5)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4RU5)

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  Cis Peptide Bonds
    Arg A:489 - Asn A:490   [ RasMol ]  
    Arg B:489 - Asn B:490   [ RasMol ]  
    Arg C:489 - Asn C:490   [ RasMol ]  
 

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