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Asym. Unit
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Asym.Unit (705 KB)
Biol.Unit 1 (696 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PSEUDOMONAS PHAGE PHI297 TAILSPIKE GP61
Authors
:
C. Browning, L. V. Sycheva, M. M. Shneider, P. G. Leiman
Date
:
18 Nov 14 (Deposition) - 18 Nov 15 (Release) - 18 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.52
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Beta-Helix, Tailspike, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Browning, L. V. Sycheva, M. M. Shneider, P. G. Leiman
Crystal Structure Of The Pseudomonas Phage Phi297 Tailspike Gp61
To Be Published
[
close entry info
]
Hetero Components
(4, 36)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
4f: SODIUM ION (NAf)
4g: SODIUM ION (NAg)
4h: SODIUM ION (NAh)
4i: SODIUM ION (NAi)
4j: SODIUM ION (NAj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
7
Ligand/Ion
ACETATE ION
2
CA
6
Ligand/Ion
CALCIUM ION
3
EDO
13
Ligand/Ion
1,2-ETHANEDIOL
4
NA
10
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:383 , ASN A:410 , ASP A:411 , GLU A:412 , HOH A:998 , HOH A:1010 , HOH A:1024
BINDING SITE FOR RESIDUE CA A 801
02
AC2
SOFTWARE
ASP A:464 , ILE A:465 , ASP A:468 , SER A:510 , HOH A:1043 , HOH A:1067 , HOH A:1126
BINDING SITE FOR RESIDUE CA A 802
03
AC3
SOFTWARE
HOH C:1881
BINDING SITE FOR RESIDUE NA A 803
04
AC4
SOFTWARE
ASP A:336 , HOH A:1407 , HOH A:1862
BINDING SITE FOR RESIDUE NA A 804
05
AC5
SOFTWARE
ARG A:301 , ASP A:302
BINDING SITE FOR RESIDUE NA A 806
06
AC6
SOFTWARE
ASP A:280 , ARG A:341 , NA A:808 , HOH A:1831
BINDING SITE FOR RESIDUE NA A 807
07
AC7
SOFTWARE
ARG A:341 , NA A:807
BINDING SITE FOR RESIDUE NA A 808
08
AC8
SOFTWARE
ASP A:232 , GLY A:233 , TYR A:234 , ALA A:235 , ILE B:227 , ARG B:344 , HOH B:1014
BINDING SITE FOR RESIDUE EDO A 809
09
AC9
SOFTWARE
THR A:664 , SER A:666 , THR A:668 , ALA A:670 , ASP C:336 , EDO C:805
BINDING SITE FOR RESIDUE EDO A 810
10
BC1
SOFTWARE
HIS A:184 , THR A:186 , ARG A:219 , HOH A:1005 , HOH A:1231 , HOH A:1259 , GLN B:615
BINDING SITE FOR RESIDUE EDO A 811
11
BC2
SOFTWARE
LYS A:155 , ASP A:156 , HOH A:1522 , HOH A:1688
BINDING SITE FOR RESIDUE EDO A 812
12
BC3
SOFTWARE
ALA A:359 , ARG A:383 , ASN A:410 , HOH A:998 , HOH A:1010 , HOH A:1124 , HOH A:1817
BINDING SITE FOR RESIDUE ACT A 813
13
BC4
SOFTWARE
ARG B:383 , ASN B:410 , ASP B:411 , GLU B:412 , HOH B:956 , HOH B:966 , HOH B:1024
BINDING SITE FOR RESIDUE CA B 801
14
BC5
SOFTWARE
ASP B:464 , ILE B:465 , ASP B:468 , SER B:510 , HOH B:1047 , HOH B:1124 , HOH B:1133
BINDING SITE FOR RESIDUE CA B 802
15
BC6
SOFTWARE
TYR B:711
BINDING SITE FOR RESIDUE NA B 803
16
BC7
SOFTWARE
ASP B:232 , GLY B:233 , TYR B:234 , ALA B:235 , HOH B:1071 , ASP C:226 , ILE C:227 , ARG C:344
BINDING SITE FOR RESIDUE EDO B 805
17
BC8
SOFTWARE
GLY B:551 , THR B:552 , SER B:553 , ARG B:584 , HOH B:931 , HOH B:1585 , HOH B:1617
BINDING SITE FOR RESIDUE EDO B 806
18
BC9
SOFTWARE
ALA B:408 , VAL B:409 , ARG B:434 , ILE B:465 , HOH B:1002 , HOH B:1246 , HOH B:1964
BINDING SITE FOR RESIDUE EDO B 807
19
CC1
SOFTWARE
ALA B:359 , ARG B:383 , ASN B:410 , HOH B:966 , HOH B:1024 , HOH B:1167 , HOH B:1886
BINDING SITE FOR RESIDUE ACT B 808
20
CC2
SOFTWARE
SER B:333 , GLU B:334 , ASP B:336 , HOH B:1790
BINDING SITE FOR RESIDUE ACT B 809
21
CC3
SOFTWARE
ALA B:673 , GLN B:674 , THR B:675 , HOH B:1406
BINDING SITE FOR RESIDUE ACT B 810
22
CC4
SOFTWARE
ARG C:383 , ASN C:410 , ASP C:411 , GLU C:412 , HOH C:1024 , HOH C:1066 , HOH C:1098
BINDING SITE FOR RESIDUE CA C 801
23
CC5
SOFTWARE
ASP C:464 , ILE C:465 , ASP C:468 , SER C:510 , HOH C:1007 , HOH C:1069 , HOH C:1184
BINDING SITE FOR RESIDUE CA C 802
24
CC6
SOFTWARE
HOH A:918 , HOH A:1625 , MET C:601
BINDING SITE FOR RESIDUE NA C 803
25
CC7
SOFTWARE
LEU C:175 , ALA C:176
BINDING SITE FOR RESIDUE NA C 804
26
CC8
SOFTWARE
ALA A:670 , TYR A:711 , EDO A:810 , HOH A:1457 , GLN C:258 , ASP C:336 , HOH C:1151
BINDING SITE FOR RESIDUE EDO C 805
27
CC9
SOFTWARE
ASP A:226 , ILE A:227 , ARG A:344 , ASP C:232 , GLY C:233 , TYR C:234 , ALA C:235 , HOH C:1035
BINDING SITE FOR RESIDUE EDO C 806
28
DC1
SOFTWARE
HOH C:1518 , HOH C:1596 , HOH C:1825
BINDING SITE FOR RESIDUE EDO C 807
29
DC2
SOFTWARE
ASP C:156 , TYR C:157 , HOH C:1737
BINDING SITE FOR RESIDUE EDO C 808
30
DC3
SOFTWARE
ASP C:300 , GLY C:551 , THR C:552 , SER C:553 , ARG C:584 , HOH C:967 , HOH C:1421
BINDING SITE FOR RESIDUE EDO C 809
31
DC4
SOFTWARE
ALA C:408 , VAL C:409 , ARG C:434 , HOH C:1079 , HOH C:1158
BINDING SITE FOR RESIDUE EDO C 810
32
DC5
SOFTWARE
ALA C:359 , ARG C:383 , ASN C:410 , HOH C:1024 , HOH C:1098 , HOH C:1164 , HOH C:1805
BINDING SITE FOR RESIDUE ACT C 811
33
DC6
SOFTWARE
HOH A:1279 , HOH A:1413 , ALA C:444 , VAL C:445 , HOH C:1083
BINDING SITE FOR RESIDUE ACT C 812
34
DC7
SOFTWARE
ALA C:673 , GLN C:674 , THR C:675 , HOH C:1434
BINDING SITE FOR RESIDUE ACT C 813
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
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all
)
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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