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(-) Description

Title :  CYRSTAL STRUCTURE OF SLIT-ROBO RHO GTPASE-ACTIVATING PROTEIN 2 FRAGMENT
 
Authors :  Y. Opatowsky, J. Guez-Hadad
Date :  16 Nov 14  (Deposition) - 04 Nov 15  (Release) - 18 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.87
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A (1x),B (1x)
Keywords :  Srgap2, Sh3, Ligand Binding, Robo1, Nuclear, Plasma Membrane, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Guez-Haddad, M. Sporny, Y. Sasson, L. Gevorkyan-Airapetov, N. Lahav-Mankovski, D. Margulies, J. Radzimanowski, Y. Opatowsky
The Neuronal Migration Factor Srgap2 Achieves Specificity I Ligand Binding Through A Two-Component Molecular Mechanism.
Structure V. 23 1989 2015
PubMed-ID: 26365803  |  Reference-DOI: 10.1016/J.STR.2015.08.009

(-) Compounds

Molecule 1 - SLIT-ROBO RHO GTPASE-ACTIVATING PROTEIN 2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 729-815
    Gene: SRGAP2, ARHGAP34, FNBP2, KIAA0456, SRGAP2A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SRGAP2, FORMIN-BINDING PROTEIN 2, RHO GTPASE-ACTIVATING PROTEIN 34

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:760 , HIS A:779BINDING SITE FOR RESIDUE SO4 A 901
2AC2SOFTWAREPRO A:730 , ARG A:742 , TYR A:758 , ARG A:794 , HOH A:1019BINDING SITE FOR RESIDUE SO4 A 902
3AC3SOFTWAREARG B:760 , HIS B:779BINDING SITE FOR RESIDUE SO4 B 901

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RTT)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Pro A:808 -Glu A:809

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RTT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RTT)

(-) Exons   (0, 0)

(no "Exon" information available for 4RTT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:80
                                                                                                                
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..................eeeeeeeee..eeeeee..eeeeee...eee...hhhhh..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 4rtt A 726 MGSEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDVVERSSPKSEIEVISEPPE 809
                                   735       745       755       765       775       785||     799       809
                                                                                      786|                  
                                                                                       791                  


Chain B from PDB  Type:PROTEIN  Length:80
                                                                                                                
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..................eeeeeeeee..eeeeee..eeeeee...eee.....hhhhh..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 4rtt B 728 SEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTEVVERSSPKSEIEVISEPPE 809
                                   737       747       757       767       777       787||     799       809
                                                                                      788|                  
                                                                                       791
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RTT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RTT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RTT)

(-) Gene Ontology  (33, 33)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        SRGP2_HUMAN | O75044: 2dl8 4rug 5i6j

(-) Related Entries Specified in the PDB File

4rug