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(-) Description

Title :  HUMAN SIRT2 IN COMPLEX WITH SIRREAL2 AND NAD+
 
Authors :  T. Rumpf, M. Schiedel, B. Karaman, C. Roessler, B. J. North, A. Lehotzky K. I. Ladwein, K. Schmidtkunz, M. Gajer, M. Pannek, C. Steegborn, D. A. S. Gerhardt, J. Ovadi, M. Schutkowski, W. Sippl, O. Einsle, M. Jung
Date :  21 Oct 14  (Deposition) - 25 Feb 15  (Release) - 25 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Hydrolase-Hydrolase Inbititor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Rumpf, M. Schiedel, B. Karaman, C. Roessler, B. J. North, A. Lehotzky, J. Olah, K. I. Ladwein, K. Schmidtkunz, M. Gajer, M. Pannek, C. Steegborn, D. A. Sinclair, S. Gerhardt, J. Ovadi, M. Schutkowski, W. Sippl, O. Einsle, M. Jung
Selective Sirt2 Inhibition By Ligand-Induced Rearrangement Of The Active Site.
Nat Commun V. 6 6263 2015
PubMed-ID: 25672491  |  Reference-DOI: 10.1038/NCOMMS7263

(-) Compounds

Molecule 1 - NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2
    Chains: A
    EC Number: 3.5.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 56-356
    Gene: SIRT2, SIR2L, SIR2L2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: REGULATORY PROTEIN SIR2 HOMOLOG 2, SIR2-LIKE PROTEIN 2

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
13TE1Ligand/Ion2-[(4,6-DIMETHYLPYRIMIDIN-2-YL)SULFANYL]-N-[5-(NAPHTHALEN-1-YLMETHYL)-1,3-THIAZOL-2-YL]ACETAMIDE
2NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3ZN1Ligand/IonZINC ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
13TE1Ligand/Ion2-[(4,6-DIMETHYLPYRIMIDIN-2-YL)SULFANYL]-N-[5-(NAPHTHALEN-1-YLMETHYL)-1,3-THIAZOL-2-YL]ACETAMIDE
2NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
13TE2Ligand/Ion2-[(4,6-DIMETHYLPYRIMIDIN-2-YL)SULFANYL]-N-[5-(NAPHTHALEN-1-YLMETHYL)-1,3-THIAZOL-2-YL]ACETAMIDE
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3ZN-1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:195 , CYS A:200 , CYS A:221 , CYS A:224BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWAREPHE A:96 , ILE A:118 , PHE A:119 , PHE A:131 , ALA A:135 , TYR A:139 , PRO A:140 , ASP A:170 , PHE A:190 , ILE A:232 , VAL A:233 , PHE A:234 , MET A:299 , HOH A:540BINDING SITE FOR RESIDUE 3TE A 402
3AC3SOFTWAREGLY A:84 , ALA A:85 , GLY A:86 , THR A:89 , ILE A:93 , PRO A:94 , ASP A:95 , PHE A:96 , GLN A:167 , ASN A:168 , ILE A:169 , ASP A:170 , HIS A:187 , GLY A:261 , THR A:262 , SER A:263 , ASN A:286 , LYS A:287 , GLU A:288 , MET A:299 , GLY A:322 , GLU A:323 , CYS A:324 , HOH A:501 , HOH A:502 , HOH A:558BINDING SITE FOR RESIDUE NAD A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RMG)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gln A:267 -Pro A:268

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RMG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RMG)

(-) Exons   (0, 0)

(no "Exon" information available for 4RMG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhh.....eeeee.hhhhhhhh........hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..eeeeee....hhhhhh..hhh.eee..eeeeeeee.......eeehhhhhhhhhhh...........eeeee.......hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhh.....eeeee..........hhhhh............eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rmg A  54 HMERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDGMIMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGWKKELEDLVRREHASIDAQS 356
                                    63        73        83        93     ||106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       299       309       319       329       339       349       
                                                                        99|                                                                                                                                                                                            294|                                                          
                                                                        103                                                                                                                                                                                             298
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RMG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RMG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RMG)

(-) Gene Ontology  (117, 117)

Asymmetric Unit(hide GO term definitions)

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  3.5.1.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SIR2_HUMAN | Q8IXJ6: 1j8f 3zgo 3zgv 4l3o 4r8m 4rmh 4rmi 4rmj 4x3o 4x3p 4y6l 4y6o 4y6q 5d7o 5d7p 5d7q 5dy4 5dy5 5fyq 5g4c 5mar 5mat

(-) Related Entries Specified in the PDB File

4rmh 4rmi 4rmj