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(-) Description

Title :  CRYSTAL STRUCTURE OF HEMOPEXIN BINDING PROTEIN
 
Authors :  S. Zambolin, B. Clantin, A. Haouz, V. Villeret, P. Delepelaire
Date :  20 Oct 14  (Deposition) - 18 May 16  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta Helix, Hemopexin Binding Protein, Hemopexin, Heme-Hemopexin- Binding Protein Complex, Outer Membrane, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Zambolin, B. Clantin, M. Chami, S. Hoos, A. Haouz, V. Villeret, P. Delepelaire
Structural Basis For Haem Piracy From Host Haemopexin By Haemophilus Influenzae.
Nat Commun V. 7 11590 2016
PubMed-ID: 27188378  |  Reference-DOI: 10.1038/NCOMMS11590

(-) Compounds

Molecule 1 - HEME/HEMOPEXIN-BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBAD24
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: HI_0264, HXUA
    Mutation: YES
    Organism Scientific: HAEMOPHILUS INFLUENZAE RD KW20
    Organism Taxid: 71421
    Strain: RD KW20

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4RM6)

(-) Sites  (0, 0)

(no "Site" information available for 4RM6)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:455 -A:461

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:654 -Pro A:655

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RM6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RM6)

(-) Exons   (0, 0)

(no "Exon" information available for 4RM6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:781
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee..eeeeee..eeeeee...eeeeee.........eeeee......eeeeee.....eee..eeee..eeeee....eee....eee..eeeee..........................eeee..eee...eeeee..eeee..eee.....eeeeee.eeeee....eeeee.........eeee..eeee.eeeeee.........eeee..eeee.ee..ee.eeeee..eeee....eeee..eeeee...eeeeee....eee..eeeee..eeeeee..........ee....ee..eeeee......eeee......eeeehhhhhhhhhhh.eeee....eeeeeeeee.hhhhh.eeeee.....eeeeeeeeee...eeee............eeeeeeeeeeeeeeeeee...hhhhh...............eeeeeeeeeeeeeeeeeee..eeeeeeeeeee....eeeee..ee...........hhhhhhh...............hhhhhhhhhhhhhh...ee....eeeee..eeeee..eeeeeeeeeeee..eeeeee......hhhhh...eeeeeeeeee..eeeeee............eeeeeeeeeeee.eeeeeee...eeeee....eeee..hhh.eeeeeee....................eeeee.....eeeeee..eeeee.....eeeee...eeeee....eeeee........ee.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rm6 A   2 ARDLPQGSSVVVGEANVSTIGNKMTIDQKTPTTQIDWHSFDIGQNKEVEFKQPDANSVAYNRVTGGNASQIQGKLTANGKVYLANPNGVIITQGAEINVAGLFATTKDLERISENNKFTRKLKDGQVVKEGQVINKGKIKAKDFVVLNGDKVINEGEIDATNNGKVYLSSGYNFTFTLSDSSISVALEDNAVQSIVQNEGIIKAGDITLNAKGRNQALDSLVMNNGVLEATKVSNKNGKVVLSADDVQLNNKSDIKGESEVVFTNENKIKITSQTGSKVTSPKINFTGKSVNINGDFGRDDSKAHYNEEHKRLDTEVNIDVPDNENIRIAEKDNTDSFIQTGALSSLLANNGKVNLKGKDVNISGRIHIDSFRGSDSLLKLTNQGHIKINHADIHSTGRLFFITSLQNEKDSQSDITITDSKINLGNGAMGLGRSLDKENCDNQRWCRTETSQRKKFDVHMRNVVFDQVDDVVVAGGFKKVNLDNIVATGKTNFYIDGGVSRNNSRYEYGVLDLDKRTLLSELDQRRRRWKYYNDLDLDMNKAYWHRFDMRSTIKDTEINISNSKINLKNGFVHLLAEKIKLDNSKIDITFDKDNSQDISTQINRLGMNGKVSMVNSHIKIVGDEKSDISAKAPYATMFLIGELIGEKSSIFVKSHQGYTFRTDGDTKIAGKNSKDDLKITAINTGGRTGKEVIINGAPGSIANMAFTIGDNANTKTTIENADITALAPNGGTAYLSSKGVEIEVNPNSNFTFFELPIKGDSTKLSERGFARLYDKINGVR 817
                                    11        21        31        41        51        61        71        81        91       101       111    || 126       136       146       156       166       176       186       196       206       216       226       236       246       256       266     ||278       288       298       308       318       328       338    || 354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564|      581       591       601       611       621       631       641       651       661       671       681       691       701       711       721||     737       747       757       767       777      |796       806       816 
                                                                                                                                            116|                                                                                                                                                   272|                                                                 343|                                                                                                                                                                                                                   564|                                                                                                                                                   722|                                                    784|                       
                                                                                                                                             122                                                                                                                                                    275                                                                  350                                                                                                                                                                                                                    572                                                                                                                                                    729                                                     794
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RM6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RM6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RM6)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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(no "Sites" information available for 4rm6)
 
  Cis Peptide Bonds
    Ala A:654 - Pro A:655   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HXUA1_HAEIN | P44602: 4i84 4rt6

(-) Related Entries Specified in the PDB File

4i84