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(-) Description

Title :  CHIMERIC GLYCOSYLTRANSFERASE LANGT2S8AC, CARBASUGAR SUBSTRATE COMPLEX
 
Authors :  H. K. Tam, S. Gerhardt, B. Breit, A. Bechthold, O. Einsle
Date :  06 Oct 14  (Deposition) - 28 Jan 15  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.22
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gt Fold, C-Glycosylating Glycosyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. K. Tam, J. Harle, S. Gerhardt, J. Rohr, G. Wang, J. S. Thorson, A. Bigot, M. Lutterbeck, W. Seiche, B. Breit, A. Bechthold, O. Einsle
Structural Characterization Of O- And C-Glycosylating Variants Of The Landomycin Glycosyltransferase Langt2.
Angew. Chem. Int. Ed. Engl. V. 54 2811 2015
PubMed-ID: 25581707  |  Reference-DOI: 10.1002/ANIE.201409792

(-) Compounds

Molecule 1 - GLYCOSYL TRANSFERASE HOMOLOG,GLYCOSYL TRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LANGT2, URDGT2
    Mutation: YES
    Organism Scientific: STREPTOMYCES CYANOGENUS, STREPTOMYCES FRADIAE
    Organism Taxid: 80860, 1906

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
13R22Ligand/Ion2'-DEOXY-5'-O-[(R)-{[(R)-{[(1S,3R,4R,5S)-3,4-DIHYDROXY-5-METHYLCYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]-3,4-DIHYDROTHYMIDINE
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:12 , PHE A:15 , TRP A:136 , ASP A:137 , ASN A:195 , GLY A:218 , SER A:219 , ARG A:220 , ALA A:247 , THR A:248 , TRP A:267 , VAL A:268 , LEU A:270 , HIS A:283 , GLY A:285 , GLY A:286 , VAL A:287 , THR A:288 , HOH A:533 , HOH A:635 , HOH A:636 , HOH A:637BINDING SITE FOR RESIDUE 3R2 A 401
2AC2SOFTWAREALA B:12 , PHE B:15 , TRP B:136 , ASP B:137 , ASN B:195 , GLY B:218 , SER B:219 , ARG B:220 , ALA B:247 , THR B:248 , TRP B:267 , VAL B:268 , LEU B:270 , HIS B:283 , GLY B:285 , GLY B:286 , VAL B:287 , THR B:288 , HOH B:507 , HOH B:515 , HOH B:582 , HOH B:628BINDING SITE FOR RESIDUE 3R2 B 401
3AC3SOFTWAREHIS A:86 , HOH A:567 , ASP B:150 , HOH B:609 , HOH B:626BINDING SITE FOR RESIDUE MG B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RIH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RIH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RIH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RIH)

(-) Exons   (0, 0)

(no "Exon" information available for 4RIH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:368
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhh....eee....hhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhh.........eeee..hhhhh.......ee............hhhhhh.....eeeee...hhhhhh.hhhhhhhhhhh.....eeeee.hhhhhhhh..eee..hhhhhhhhh.eeee..hhhhhhhhhhh...eee......hhhhhhhhhhhh.eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rih A   1 MKILFVAAGSPATVFALAPLATAARNAGHDVFMGAVEDMVPYIASAGIPAVATTDLPIRHFITMDREGNPVRMPETPEEELDFAGHWFGRMAAGSMDALREVTANWRPDLVVGGSMSFAAALIAAELGVPYVRQAWDTGDAWRTDPAASDELRPELRALGLDRLPDPALFVDICPPSLRPADAPPAQMMRWVPANGQRRLEPWMYTKGNRPRILVTSGSRLVFAKKTGFLRGLVADMAALDAEVVIATLDEVAEELGVRAGWVPLDVVVPTCDVVVHHAGGVTALTAMNAGVPQLIVPQGGNFVEAGLRISDFGAAITVDENTPEAVEKACGELIGNPSYAERARELSAEIAALPLPAEVVGALEGLV 373
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                                                                                                                                                                                                                                                                                         256|                                                                                                               
                                                                                                                                                                                                                                                                                          262                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:374
                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhh....eee....hhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhh.........eeee..hhhhh.......ee............hhhhhh.....eeeee...hhhhhh.hhhhhhhhhhh.....eeeee.hhhhhhhhhhhh...eee..hhhhhhhhh.eeee..hhhhhhhhhhh...eee......hhhhhhhhhhhh.eee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rih B   1 MKILFVAAGSPATVFALAPLATAARNAGHDVFMGAVEDMVPYIASAGIPAVATTDLPIRHFITMDREGNPVRMPETPEEELDFAGHWFGRMAAGSMDALREVTANWRPDLVVGGSMSFAAALIAAELGVPYVRQAWDTGDAWRTDPAASDELRPELRALGLDRLPDPALFVDICPPSLRPADAPPAQMMRWVPANGQRRLEPWMYTKGNRPRILVTSGSRLVFAKKTGFLRGLVADMAALDAEVVIATLDEVAEELRTELPGVRAGWVPLDVVVPTCDVVVHHAGGVTALTAMNAGVPQLIVPQGGNFVEAGLRISDFGAAITVDENTPEAVEKACGELIGNPSYAERARELSAEIAALPLPAEVVGALEGLVE 374
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RIH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RIH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RIH)

(-) Gene Ontology  (1, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        Q9RPA7_STRFR | Q9RPA7: 2p6p 4rig 4rii
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