4RGE - JenaLib

Title :   CRYSTAL STRUCTURE OF THE IN-LINE ALIGNED ENV22 TWISTER RIBOZYME

Authors :   A. Ren, K. R. Rajashankar, D. Simanshu, D. Patel

Date :   30 Sep 14 (Deposition) - 03 Dec 14 (Release) - 03 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.89

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Pseudoknot, Stem, Cleavage, Deoxyuridine Monophosphate, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Ren, M. Kosutic, K. R. Rajashankar, M. Frener, T. Santner, E. Westhof, R. Micura, D. J. Patel
In-Line Alignment And Mg(2+) Coordination At The Cleavage Site Of The Env22 Twister Ribozyme.
Nat Commun V. 5 5534 2014
PubMed-ID: 25410397 | Reference-DOI: 10.1038/NCOMMS6534

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 30)

Sites (27, 27)

Asymmetric Unit (27, 27)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	A A:6 , A A:7 , U A:8 , HOH A:201 , HOH A:202 , HOH A:203	BINDING SITE FOR RESIDUE MG A 101
02	AC2	SOFTWARE	U A:2 , A A:17	BINDING SITE FOR RESIDUE MG A 102
03	AC3	SOFTWARE	G A:53 , HOH A:215 , HOH A:216	BINDING SITE FOR RESIDUE MG A 103
04	AC4	SOFTWARE	G A:27 , G A:28 , HOH A:204 , HOH A:205 , HOH A:206	BINDING SITE FOR RESIDUE MG A 104
05	AC5	SOFTWARE	U A:30 , C A:31 , C A:32	BINDING SITE FOR RESIDUE MG A 105
06	AC6	SOFTWARE	U A:41 , A A:42 , A A:43 , HOH A:210 , HOH A:211 , HOH A:212	BINDING SITE FOR RESIDUE MG A 106
07	AC7	SOFTWARE	U A:30 , A A:35 , HOH A:222	BINDING SITE FOR RESIDUE MG A 107
08	AC8	SOFTWARE	G A:19 , HOH A:217 , HOH A:218 , HOH A:219 , U B:30 , C B:31 , U C:41	BINDING SITE FOR RESIDUE MG A 108
09	AC9	SOFTWARE	A A:7 , U A:8	BINDING SITE FOR RESIDUE MG A 109
10	BC1	SOFTWARE	HOH A:224 , HOH A:225 , HOH A:226	BINDING SITE FOR RESIDUE MG A 110
11	BC2	SOFTWARE	A B:6 , A B:7 , U B:8 , HOH B:201 , HOH B:202 , HOH B:203	BINDING SITE FOR RESIDUE MG B 101
12	BC3	SOFTWARE	U B:24 , G B:25 , HOH B:204 , HOH B:205	BINDING SITE FOR RESIDUE MG B 102
13	BC4	SOFTWARE	G B:27 , G B:28 , HOH B:206 , HOH B:207 , HOH B:208	BINDING SITE FOR RESIDUE MG B 103
14	BC5	SOFTWARE	U B:4 , A B:6 , C B:31 , HOH B:210 , HOH B:211	BINDING SITE FOR RESIDUE MG B 104
15	BC6	SOFTWARE	U B:41 , A B:42 , A B:43 , HOH B:212 , HOH B:213 , HOH B:214 , HOH B:215	BINDING SITE FOR RESIDUE MG B 105
16	BC7	SOFTWARE	G B:53 , HOH B:222 , HOH B:224	BINDING SITE FOR RESIDUE MG B 106
17	BC8	SOFTWARE	U B:30 , A B:35 , HOH B:218 , HOH B:225	BINDING SITE FOR RESIDUE MG B 107
18	BC9	SOFTWARE	HOH B:217 , HOH B:228 , HOH B:229	BINDING SITE FOR RESIDUE MG B 108
19	CC1	SOFTWARE	A C:6 , A C:7 , U C:8 , HOH C:205 , HOH C:206 , HOH C:207	BINDING SITE FOR RESIDUE MG C 101
20	CC2	SOFTWARE	HOH C:201 , HOH C:203 , HOH C:204 , HOH C:225	BINDING SITE FOR RESIDUE MG C 102
21	CC3	SOFTWARE	U C:24 , HOH C:208 , HOH C:209 , HOH C:210	BINDING SITE FOR RESIDUE MG C 103
22	CC4	SOFTWARE	A C:26 , HOH C:211	BINDING SITE FOR RESIDUE MG C 104
23	CC5	SOFTWARE	G C:27 , G C:28 , HOH C:213 , HOH C:214 , HOH C:215 , HOH C:216	BINDING SITE FOR RESIDUE MG C 105
24	CC6	SOFTWARE	U C:30 , HOH C:217 , HOH C:222	BINDING SITE FOR RESIDUE MG C 106
25	CC7	SOFTWARE	A C:42 , A C:43 , HOH C:218 , HOH C:219 , HOH C:220 , HOH C:224	BINDING SITE FOR RESIDUE MG C 107
26	CC8	SOFTWARE	HOH C:223	BINDING SITE FOR RESIDUE MG C 108
27	CC9	SOFTWARE	HOH C:227	BINDING SITE FOR RESIDUE MG C 109

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA/RNA  Length:56
                                                                                       
                  4rge A  1 UUUUxAAUGAAGCCACAGGCCUGUGAGGGUCCUAAGCCCCUAAUUCAGAAGGGAAA 56
                                |   10        20        30        40        50      
                                5-DU

Chain B from PDB  Type:DNA/RNA  Length:56
                                                                                       
                  4rge B  1 UUUUxAAUGAAGCCACAGGCCUGUGAGGGUCCUAAGCCCCUAAUUCAGAAGGGAAA 56
                                |   10        20        30        40        50      
                                5-DU

Chain C from PDB  Type:DNA/RNA  Length:55
                                                                                      
                  4rge C  1 UUUUxAAUGAAGCCACAGGCCUGUGAGGGUCCUAAGCCCCUAAUUCAGAAGGGAA 55
                                |   10        20        30        40        50     
                                5-DU

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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