Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF G1PDH WITH NADPH FROM METHANOCALDOCOCCUS JANNASCHII
 
Authors :  V. Carbone, R. S. Ronimus, L. R. Schofield, A. J. Sutherland-Smith
Date :  26 Sep 14  (Deposition) - 22 Jul 15  (Release) - 16 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Rossman Fold Metal Ion Binding, Dehydrogenase, Nadp(H) Binding, Sn- Glycerol-1-Phosphate Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Carbone, L. R. Schofield, Y. Zhang, C. Sang, D. Dey, I. M. Hannus, W. F. Martin, A. J. Sutherland-Smith, R. S. Ronimus
Structure And Evolution Of The Archaeal Lipid Synthesis Enzyme Sn-Glycerol-1-Phosphate Dehydrogenase.
J. Biol. Chem. V. 290 21690 2015
PubMed-ID: 26175150  |  Reference-DOI: 10.1074/JBC.M115.647461

(-) Compounds

Molecule 1 - GLYCEROL-1-PHOSPHATE DEHYDROGENASE [NAD(P)+]
    Chains: A, B, C, D
    EC Number: 1.1.1.261
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET100D
    Expression System Strain: ROSETTA 2(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: EGSA, MJ0712
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII DSM 2661
    Organism Taxid: 243232
    Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440
    Synonym: G1P DEHYDROGENASE, G1PDH, ENANTIOMERIC GLYCEROPHOSPHATE SYNTHASE, SN-GLYCEROL-1-PHOSPHATE DEHYDROGENASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 28)

Asymmetric Unit (5, 28)
No.NameCountTypeFull Name
1EDO15Ligand/Ion1,2-ETHANEDIOL
2K4Ligand/IonPOTASSIUM ION
3NA1Ligand/IonSODIUM ION
4NDP4Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
5ZN4Ligand/IonZINC ION
Biological Unit 1 (2, 10)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL
2K-1Ligand/IonPOTASSIUM ION
3NA-1Ligand/IonSODIUM ION
4NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
5ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 9)
No.NameCountTypeFull Name
1EDO7Ligand/Ion1,2-ETHANEDIOL
2K-1Ligand/IonPOTASSIUM ION
3NA-1Ligand/IonSODIUM ION
4NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
5ZN-1Ligand/IonZINC ION

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:36 , LYS A:37 , ASN A:38 , THR A:39 , TYR A:42 , TYR A:52 , GLY A:78 , ARG A:79 , ASP A:82 , THR A:100 , THR A:101 , SER A:103 , ASN A:104 , GLY A:106 , SER A:113 , SER A:137 , PRO A:138 , LEU A:141 , HIS A:230 , HIS A:247 , ZN A:403 , EDO A:407 , HOH A:501 , HOH A:511 , HOH A:521 , HOH A:531 , HOH A:592 , HOH A:601BINDING SITE FOR RESIDUE NDP A 401
02AC2SOFTWAREASP A:105 , ASP A:148 , SER A:151 , ASN A:152 , ALA A:221BINDING SITE FOR RESIDUE K A 402
03AC3SOFTWAREASP A:148 , HIS A:226 , HIS A:247 , NDP A:401 , HOH A:501BINDING SITE FOR RESIDUE ZN A 403
04AC4SOFTWAREILE A:3 , VAL A:4 , PRO A:110 , MET A:120 , VAL A:121 , ALA A:123 , ALA A:213 , ASN A:216BINDING SITE FOR RESIDUE EDO A 404
05AC5SOFTWAREILE A:2 , ILE A:3 , ILE B:11BINDING SITE FOR RESIDUE EDO A 405
06AC6SOFTWAREILE A:11 , ILE B:2 , ILE B:3BINDING SITE FOR RESIDUE EDO A 406
07AC7SOFTWARESER A:118 , SER A:218 , SER A:222 , HIS A:230 , ARG A:310 , NDP A:401 , HOH A:513BINDING SITE FOR RESIDUE EDO A 407
08AC8SOFTWARELYS A:264 , LEU A:328 , GLU A:331BINDING SITE FOR RESIDUE EDO A 408
09AC9SOFTWAREARG A:139 , TYR A:197BINDING SITE FOR RESIDUE EDO A 409
10BC1SOFTWAREGLY B:36 , LYS B:37 , ASN B:38 , THR B:39 , TYR B:52 , GLY B:77 , GLY B:78 , ARG B:79 , ASP B:82 , THR B:100 , THR B:101 , SER B:103 , ASN B:104 , GLY B:106 , SER B:113 , SER B:137 , PRO B:138 , LEU B:141 , HIS B:226 , HIS B:230 , HIS B:247 , ZN B:403 , HOH B:515 , HOH B:540 , HOH B:548 , HOH B:556 , HOH B:573 , HOH B:578 , HOH B:604BINDING SITE FOR RESIDUE NDP B 401
11BC2SOFTWAREASP B:105 , ASP B:148 , SER B:151 , ASN B:152 , ALA B:221BINDING SITE FOR RESIDUE K B 402
12BC3SOFTWAREASP B:148 , HIS B:226 , HIS B:247 , NDP B:401 , HOH B:501BINDING SITE FOR RESIDUE ZN B 403
13BC4SOFTWARELYS B:179 , LYS B:183BINDING SITE FOR RESIDUE EDO B 404
14BC5SOFTWARECYS B:43 , ARG B:44 , PHE B:45 , PHE B:46 , HOH B:559 , LEU D:194 , LYS D:282 , VAL D:283 , ASP D:284BINDING SITE FOR RESIDUE EDO B 405
15BC6SOFTWAREGLY C:36 , LYS C:37 , ASN C:38 , THR C:39 , TYR C:42 , TYR C:52 , GLY C:77 , GLY C:78 , ARG C:79 , ASP C:82 , THR C:100 , THR C:101 , SER C:103 , ASN C:104 , ASP C:105 , GLY C:106 , ILE C:111 , SER C:113 , SER C:137 , LEU C:141 , HIS C:247 , HOH C:501 , HOH C:521 , HOH C:553BINDING SITE FOR RESIDUE NDP C 401
16BC7SOFTWAREASP C:105 , ASP C:148 , SER C:151 , ASN C:152 , ALA C:221BINDING SITE FOR RESIDUE K C 402
17BC8SOFTWAREASP C:148 , HIS C:226 , HIS C:247 , HOH C:501BINDING SITE FOR RESIDUE ZN C 403
18BC9SOFTWAREILE C:2 , ILE C:3 , ILE D:11BINDING SITE FOR RESIDUE EDO C 404
19CC1SOFTWARESER C:143 , TYR C:197 , VAL C:283BINDING SITE FOR RESIDUE EDO C 405
20CC2SOFTWAREILE C:3 , VAL C:4 , PRO C:110 , VAL C:121 , ALA C:123 , ALA C:213 , ASN C:216BINDING SITE FOR RESIDUE EDO C 406
21CC3SOFTWAREILE C:11 , ILE D:2BINDING SITE FOR RESIDUE EDO C 407
22CC4SOFTWAREARG C:7 , TYR C:8 , ILE D:125 , HOH D:592BINDING SITE FOR RESIDUE NA C 408
23CC5SOFTWAREGLY D:36 , LYS D:37 , ASN D:38 , THR D:39 , TYR D:42 , TYR D:52 , GLY D:77 , GLY D:78 , ARG D:79 , ASP D:82 , THR D:100 , SER D:103 , ASN D:104 , GLY D:106 , SER D:113 , GLN D:116 , SER D:137 , PRO D:138 , LEU D:141 , HIS D:230 , HIS D:247 , HOH D:501 , HOH D:535 , HOH D:538 , HOH D:540 , HOH D:573BINDING SITE FOR RESIDUE NDP D 401
24CC6SOFTWAREASP D:105 , ASP D:148 , SER D:151 , ASN D:152 , ALA D:221BINDING SITE FOR RESIDUE K D 402
25CC7SOFTWAREASP D:148 , HIS D:226 , HIS D:247 , HOH D:501BINDING SITE FOR RESIDUE ZN D 403
26CC8SOFTWARELYS B:282 , CYS D:43 , ARG D:44 , PHE D:45 , PHE D:46BINDING SITE FOR RESIDUE EDO D 404
27CC9SOFTWARELYS D:203BINDING SITE FOR RESIDUE EDO D 405
28DC1SOFTWARELEU D:26 , HOH D:527 , HOH D:541BINDING SITE FOR RESIDUE EDO D 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RFL)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gln A:116 -Pro A:117
2Gln B:116 -Pro B:117
3Gln C:116 -Pro C:117
4Gln D:116 -Pro D:117

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RFL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RFL)

(-) Exons   (0, 0)

(no "Exon" information available for 4RFL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...eeeee.hhhhhhhhhhhhh....eeeee...hhhhh....eeeehhhhhhh..hhhhh...eeeeeehhhhhhhhhhhhhhhh..eeeee....hhhhh..ee......ee.....eeeeehhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh...........hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rfl A   2 IIVTPRYTIIEDGAINKIEEILKKLNLKNPLVITGKNTKKYCRFFYDIVYYDEILNNLELKKYTAYDCVIGIGGGRSIDTGKYLAYKLGIPFISVPTTASNDGIASPIVSIRQPSFMVDAPIAIIADTEIIKKSPRRLLSAGMGDIVSNITAVLDWKLAYKEKGEKYSESSAIFSKTIAKELISYVLNSDLSEYHNKLVKALVGSGIAIAIANSSRPASGSEHLFSHALDKLKEEYNLNINSLHGEQCGIGTIMMSYLHEKENKKLSGLHEKIKMSLKKVDAPTTAKELGFDEDIIIEALTMAHKIRNRWTILRDGLSREEARKLAEETGVI 335
                                    11        21        31        41        51        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333  
                                                                                     60|                                                                                                                                                                                                                                                                                
                                                                                      63                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...eeeee.hhhhhhhhhhhhh....eeeee...hhhhh....eeeehhhhhhh..........eeeeeehhhhhhhhhhhhhhhh..eeeee....hhhhh..ee......ee.....eeeeehhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh...........hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rfl B   2 IIVTPRYTIIEDGAINKIEEILKKLNLKNPLVITGKNTKKYCRFFYDIVYYDEILNNLELKKYTAYDCVIGIGGGRSIDTGKYLAYKLGIPFISVPTTASNDGIASPIVSIRQPSFMVDAPIAIIADTEIIKKSPRRLLSAGMGDIVSNITAVLDWKLAYKEKGEKYSESSAIFSKTIAKELISYVLNSDLSEYHNKLVKALVGSGIAIAIANSSRPASGSEHLFSHALDKLKEEYNLNINSLHGEQCGIGTIMMSYLHEKENKKLSGLHEKIKMSLKKVDAPTTAKELGFDEDIIIEALTMAHKIRNRWTILRDGLSREEARKLAEETGVI 335
                                    11        21        31        41        51        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333  
                                                                                     60|                                                                                                                                                                                                                                                                                
                                                                                      63                                                                                                                                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...eeeee.hhhhhhhhhhhhh....eeeee...hhhhh....eeeehhhhhh........eeeeeehhhhhhhhhhhhhhhh..eeeee....hhhhh..ee......ee.....eeeeehhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh...........hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rfl C   2 IIVTPRYTIIEDGAINKIEEILKKLNLKNPLVITGKNTKKYCRFFYDIVYYDEILNNKKYTAYDCVIGIGGGRSIDTGKYLAYKLGIPFISVPTTASNDGIASPIVSIRQPSFMVDAPIAIIADTEIIKKSPRRLLSAGMGDIVSNITAVLDWKLAYKEKGEKYSESSAIFSKTIAKELISYVLNSDLSEYHNKLVKALVGSGIAIAIANSSRPASGSEHLFSHALDKLKEEYNLNINSLHGEQCGIGTIMMSYLHEKENKKLSGLHEKIKMSLKKVDAPTTAKELGFDEDIIIEALTMAHKIRNRWTILRDGLSREEARKLAEETGVI 335
                                    11        21        31        41        51      ||66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326         
                                                                                   58|                                                                                                                                                                                                                                                                               
                                                                                    64                                                                                                                                                                                                                                                                               


Chain D from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...eeeee.hhhhhhhhhhhhh....eeeee...hhhhh....eeeehhhhh....hhhhh...eeeeeehhhhhhhhhhhhhhhh..eeeee....hhhhh..ee.....ee.....eeeeehhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh...........hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rfl D   2 IIVTPRYTIIEDGAINKIEEILKKLNLKNPLVITGKNTKKYCRFFYDIVYYDEILNNLELKKYTAYDCVIGIGGGRSIDTGKYLAYKLGIPFISVPTTASNDGIASPIVSIQPSFMVDAPIAIIADTEIIKKSPRRLLSAGMGDIVSNITAVLDWKLAYKEKGEKYSESSAIFSKTIAKELISYVLNSDLSEYHNKLVKALVGSGIAIAIANSSRPASGSEHLFSHALDKLKEEYNLNINSLHGEQCGIGTIMMSYLHEKENKKLSGLHEKIKMSLKKVDAPTTAKELGFDEDIIIEALTMAHKIRNRWTILRDGLSREEARKLAEETGVI 335
                                    11        21        31        41        51        63        73        83        93       103       113||     124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334 
                                                                                     60|                                                114|                                                                                                                                                                                                                           
                                                                                      63                                                 116
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RFL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RFL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RFL)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    K  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NDP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gln A:116 - Pro A:117   [ RasMol ]  
    Gln B:116 - Pro B:117   [ RasMol ]  
    Gln C:116 - Pro C:117   [ RasMol ]  
    Gln D:116 - Pro D:117   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4rfl
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  G1PDH_METJA | Q58122
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.1.1.261
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  G1PDH_METJA | Q58122
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G1PDH_METJA | Q58122: 4rgq 4rgv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4RFL)