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4RFL
Biol. Unit 1
Info
Asym.Unit (235 KB)
Biol.Unit 1 (117 KB)
Biol.Unit 2 (115 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF G1PDH WITH NADPH FROM METHANOCALDOCOCCUS JANNASCHII
Authors
:
V. Carbone, R. S. Ronimus, L. R. Schofield, A. J. Sutherland-Smith
Date
:
26 Sep 14 (Deposition) - 22 Jul 15 (Release) - 16 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Rossman Fold Metal Ion Binding, Dehydrogenase, Nadp(H) Binding, Sn- Glycerol-1-Phosphate Dehydrogenase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
V. Carbone, L. R. Schofield, Y. Zhang, C. Sang, D. Dey, I. M. Hannus, W. F. Martin, A. J. Sutherland-Smith, R. S. Ronimus
Structure And Evolution Of The Archaeal Lipid Synthesis Enzyme Sn-Glycerol-1-Phosphate Dehydrogenase.
J. Biol. Chem. V. 290 21690 2015
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
3a: SODIUM ION (NAa)
4a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
4b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
4c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
4d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
2
K
-1
Ligand/Ion
POTASSIUM ION
3
NA
-1
Ligand/Ion
SODIUM ION
4
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
5
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: CC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:36 , LYS A:37 , ASN A:38 , THR A:39 , TYR A:42 , TYR A:52 , GLY A:78 , ARG A:79 , ASP A:82 , THR A:100 , THR A:101 , SER A:103 , ASN A:104 , GLY A:106 , SER A:113 , SER A:137 , PRO A:138 , LEU A:141 , HIS A:230 , HIS A:247 , ZN A:403 , EDO A:407 , HOH A:501 , HOH A:511 , HOH A:521 , HOH A:531 , HOH A:592 , HOH A:601
BINDING SITE FOR RESIDUE NDP A 401
02
AC2
SOFTWARE
ASP A:105 , ASP A:148 , SER A:151 , ASN A:152 , ALA A:221
BINDING SITE FOR RESIDUE K A 402
03
AC3
SOFTWARE
ASP A:148 , HIS A:226 , HIS A:247 , NDP A:401 , HOH A:501
BINDING SITE FOR RESIDUE ZN A 403
04
AC4
SOFTWARE
ILE A:3 , VAL A:4 , PRO A:110 , MET A:120 , VAL A:121 , ALA A:123 , ALA A:213 , ASN A:216
BINDING SITE FOR RESIDUE EDO A 404
05
AC5
SOFTWARE
ILE A:2 , ILE A:3 , ILE B:11
BINDING SITE FOR RESIDUE EDO A 405
06
AC6
SOFTWARE
ILE A:11 , ILE B:2 , ILE B:3
BINDING SITE FOR RESIDUE EDO A 406
07
AC7
SOFTWARE
SER A:118 , SER A:218 , SER A:222 , HIS A:230 , ARG A:310 , NDP A:401 , HOH A:513
BINDING SITE FOR RESIDUE EDO A 407
08
AC8
SOFTWARE
LYS A:264 , LEU A:328 , GLU A:331
BINDING SITE FOR RESIDUE EDO A 408
09
AC9
SOFTWARE
ARG A:139 , TYR A:197
BINDING SITE FOR RESIDUE EDO A 409
10
BC1
SOFTWARE
GLY B:36 , LYS B:37 , ASN B:38 , THR B:39 , TYR B:52 , GLY B:77 , GLY B:78 , ARG B:79 , ASP B:82 , THR B:100 , THR B:101 , SER B:103 , ASN B:104 , GLY B:106 , SER B:113 , SER B:137 , PRO B:138 , LEU B:141 , HIS B:226 , HIS B:230 , HIS B:247 , ZN B:403 , HOH B:515 , HOH B:540 , HOH B:548 , HOH B:556 , HOH B:573 , HOH B:578 , HOH B:604
BINDING SITE FOR RESIDUE NDP B 401
11
BC2
SOFTWARE
ASP B:105 , ASP B:148 , SER B:151 , ASN B:152 , ALA B:221
BINDING SITE FOR RESIDUE K B 402
12
BC3
SOFTWARE
ASP B:148 , HIS B:226 , HIS B:247 , NDP B:401 , HOH B:501
BINDING SITE FOR RESIDUE ZN B 403
13
BC4
SOFTWARE
LYS B:179 , LYS B:183
BINDING SITE FOR RESIDUE EDO B 404
14
BC5
SOFTWARE
CYS B:43 , ARG B:44 , PHE B:45 , PHE B:46 , HOH B:559 , LEU D:194 , LYS D:282 , VAL D:283 , ASP D:284
BINDING SITE FOR RESIDUE EDO B 405
15
CC8
SOFTWARE
LYS B:282 , CYS D:43 , ARG D:44 , PHE D:45 , PHE D:46
BINDING SITE FOR RESIDUE EDO D 404
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Asymmetric Unit 1
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Asym.Unit (235 KB)
Header - Asym.Unit
Biol.Unit 1 (117 KB)
Header - Biol.Unit 1
Biol.Unit 2 (115 KB)
Header - Biol.Unit 2
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