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(-) Description

Title :  CRYSTAL STRUCTURE OF VMOLAC IN P64 SPACE GROUP
 
Authors :  J. Hiblot, J. Bzdrenga, C. Champion, G. Gotthard, D. Gonzalez, E. Chabr M. Elias
Date :  20 Sep 14  (Deposition) - 25 Feb 15  (Release) - 25 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Lactonase, Quorum Sensing, Parathion Hydrolase, Aryldialkylphosphatase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hiblot, J. Bzdrenga, C. Champion, E. Chabriere, M. Elias
Crystal Structure Of Vmolac, A Tentative Quorum Quenching Lactonase From The Extremophilic Crenarchaeon Vulcanisaeta Moutnovskia.
Sci Rep V. 5 8372 2015
PubMed-ID: 25670483  |  Reference-DOI: 10.1038/SREP08372

(-) Compounds

Molecule 1 - PARATHION HYDROLASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: VMUT_2255
    Organism Scientific: VULCANISAETA MOUTNOVSKIA
    Organism Taxid: 985053
    Strain: 768-28

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric/Biological Unit (4, 10)
No.NameCountTypeFull Name
1CO4Ligand/IonCOBALT (II) ION
2GOL2Ligand/IonGLYCEROL
3KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
4MYR2Ligand/IonMYRISTIC ACID

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:23 , HIS A:25 , ASP A:257 , CO A:402 , MYR A:404 , HOH A:985BINDING SITE FOR RESIDUE CO A 401
2AC2SOFTWAREHIS A:171 , HIS A:200 , ARG A:224 , CO A:401 , MYR A:404 , HOH A:985BINDING SITE FOR RESIDUE CO A 402
3AC3SOFTWARETHR A:99 , TYR A:100 , TRP A:264 , HOH A:519 , HOH A:531 , HOH A:587 , HOH A:607 , HOH A:678 , PHE B:105BINDING SITE FOR RESIDUE GOL A 403
4AC4SOFTWAREHIS A:25 , TYR A:98 , HIS A:171 , ARG A:224 , ILE A:229 , ASP A:257 , TRP A:264 , CO A:401 , CO A:402 , HOH A:985BINDING SITE FOR RESIDUE MYR A 404
5AC5SOFTWAREHIS B:23 , HIS B:25 , ASP B:257 , CO B:402 , MYR B:404 , HOH B:1007BINDING SITE FOR RESIDUE CO B 401
6AC6SOFTWAREHIS B:171 , HIS B:200 , ARG B:224 , CO B:401 , MYR B:404 , HOH B:1007BINDING SITE FOR RESIDUE CO B 402
7AC7SOFTWAREGLU B:211 , ARG B:215 , ARG B:246 , HOH B:722 , HOH B:808BINDING SITE FOR RESIDUE GOL B 403
8AC8SOFTWAREHIS B:25 , TYR B:98 , HIS B:171 , ARG B:224 , ASP B:257 , TRP B:264 , CO B:401 , CO B:402 , HOH B:1007BINDING SITE FOR RESIDUE MYR B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RDZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RDZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RDZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RDZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4RDZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:315
                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.....eehhhhh..eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhh.eee..ee.......hhhhhh.hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhh...eeee.........hhhhhhhhhhhhhhh.hhh.eee...........hhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rdz A   0 GMVRISIAGGNEIDPGSMGLTLFHEHLRLITEVVRWNWPHLYNEDEELKRAIDAVNAAKKYGVKTIIDLTVAGIGCDVRFNEKVAKATGVNIIMGTGFYTYTEIPFYFKNRGIDSLVDAFVHDITIGIQGTNTRAAFVkAVIDSSGLTKDVEMAIRAAAKAHIKTDVPIITHSFVGNKSSLDLIRIFKEEGVDLARTVIGHVGDTDDISFIEQILREGAFIGLDRFGLDIYLPLDKRVKTAIELIKRGWIDQLLLSHDYCPTIDWYPPEVVRSTVPDWTMTLIFEKVIPRMRSEGITEEQINRVLIDNPRRLFTG 314
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309     
                                                                                                                                                                    138-KCX                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.....eehhhhh..eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhh.eee..ee.......hhhhhh.hhhhhhhhhhhhhhh...........eeee......hhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhh...eeee.........hhhhhhhhhhhhhhh.hhh.eee...........hhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rdz B   0 GMVRISIAGGNEIDPGSMGLTLFHEHLRLITEVVRWNWPHLYNEDEELKRAIDAVNAAKKYGVKTIIDLTVAGIGCDVRFNEKVAKATGVNIIMGTGFYTYTEIPFYFKNRGIDSLVDAFVHDITIGIQGTNTRAAFVkAVIDSSGLTKDVEMAIRAAAKAHIKTDVPIITHSFVGNKSSLDLIRIFKEEGVDLARTVIGHVGDTDDISFIEQILREGAFIGLDRFGLDIYLPLDKRVKTAIELIKRGWIDQLLLSHDYCPTIDWYPPEVVRSTVPDWTMTLIFEKVIPRMRSEGITEEQINRVLIDNPRRLFTGR 315
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309      
                                                                                                                                                                    138-KCX
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RDZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RDZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RDZ)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        F0QXN6_VULM7 | F0QXN6: 4rdy 4re0

(-) Related Entries Specified in the PDB File

4rdy CRYSTAL STRUCTURE OF CMOLAC BOUND TO 3-OXO-C10 AHL
4re0 CRYSTAL STRUCTURE OF VMOLAC IN P622 SPACE GROUP