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(-) Description

Title :  CRYSTAL STRUCTURE OF VMOLAC IN P622 SPACE GROUP
 
Authors :  J. Hiblot, J. Bzdrenga, C. Champion, G. Gotthard, D. Gonzalez, E. Chabr M. Elias
Date :  20 Sep 14  (Deposition) - 25 Feb 15  (Release) - 25 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Lactonase, Quorum Sensing, Parathion Hydrolase, Aryldialkylesterase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hiblot, J. Bzdrenga, C. Champion, E. Chabriere, M. Elias
Crystal Structure Of Vmolac, A Tentative Quorum Quenching Lactonase From The Extremophilic Crenarchaeon Vulcanisaeta Moutnovskia.
Sci Rep V. 5 8372 2015
PubMed-ID: 25670483  |  Reference-DOI: 10.1038/SREP08372

(-) Compounds

Molecule 1 - PARATHION HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: VMUT_2255
    Organism Scientific: VULCANISAETA MOUTNOVSKIA
    Organism Taxid: 985053
    Strain: 768-28

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric Unit (5, 10)
No.NameCountTypeFull Name
1CO2Ligand/IonCOBALT (II) ION
2GOL4Ligand/IonGLYCEROL
3KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
4MYR1Ligand/IonMYRISTIC ACID
5SO42Ligand/IonSULFATE ION
Biological Unit 1 (4, 16)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2GOL8Ligand/IonGLYCEROL
3KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
4MYR2Ligand/IonMYRISTIC ACID
5SO44Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:23 , HIS A:25 , ASP A:257 , CO A:402 , MYR A:407 , HOH A:788BINDING SITE FOR RESIDUE CO A 401
2AC2SOFTWAREHIS A:171 , HIS A:200 , CO A:401 , MYR A:407 , HOH A:788BINDING SITE FOR RESIDUE CO A 402
3AC3SOFTWAREPHE A:173 , ASP A:203 , TYR A:230BINDING SITE FOR RESIDUE GOL A 403
4AC4SOFTWAREPHE A:105 , LYS A:108 , ASN A:109 , TYR A:265 , HOH A:762BINDING SITE FOR RESIDUE GOL A 404
5AC5SOFTWARETRP A:248BINDING SITE FOR RESIDUE GOL A 405
6AC6SOFTWARELYS A:177 , ASP A:234 , ARG A:289BINDING SITE FOR RESIDUE GOL A 406
7AC7SOFTWAREHIS A:25 , TYR A:98 , HIS A:171 , ARG A:224 , ASP A:257 , TYR A:265 , THR A:273 , CO A:401 , CO A:402 , HOH A:772 , HOH A:788BINDING SITE FOR RESIDUE MYR A 407
8AC8SOFTWARESER A:208 , GLU A:211 , ARG A:215BINDING SITE FOR RESIDUE SO4 A 408
9AC9SOFTWAREHIS A:161 , ILE A:162 , GLY A:190 , VAL A:191 , ASP A:192 , HOH A:642 , HOH A:652BINDING SITE FOR RESIDUE SO4 A 409

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RE0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RE0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RE0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RE0)

(-) Exons   (0, 0)

(no "Exon" information available for 4RE0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.....eehhhhh..eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhh.eee..ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhh...eeee.........hhhhhhhhhhhhhhh.hhh.eee...........hhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4re0 A   1 MVRISIAGGNEIDPGSMGLTLFHEHLRLITEVVRWNWPHLYNEDEELKRAIDAVNAAKKYGVKTIIDLTVAGIGCDVRFNEKVAKATGVNIIMGTGFYTYTEIPFYFKNRGIDSLVDAFVHDITIGIQGTNTRAAFVkAVIDSSGLTKDVEMAIRAAAKAHIKTDVPIITHSFVGNKSSLDLIRIFKEEGVDLARTVIGHVGDTDDISFIEQILREGAFIGLDRFGLDIYLPLDKRVKTAIELIKRGWIDQLLLSHDYCPTIDWYPPEVVRSTVPDWTMTLIFEKVIPRMRSEGITEEQINRVLIDNPRRLFTG 314
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310    
                                                                                                                                                                   138-KCX
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RE0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RE0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RE0)

(-) Gene Ontology  (5, 5)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        F0QXN6_VULM7 | F0QXN6: 4rdy 4rdz

(-) Related Entries Specified in the PDB File

4rdy CRYSTAL STRUCTURE OF CMOLAC BOUND TO 3-OXO-C10 AHL
4rdz CRYSTAL STRUCTURE OF VMOLAC IN P64 SPACE GROUP