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(-) Description

Title :  CRYSTAL STRUCTURE OF NUCLEAR RECEPTOR SUBFAMILY 1, GROUP H, MEMBER 2 (LXRB) COMPLEXED WITH PARTIAL AGONIST
 
Authors :  M. Nanao
Date :  10 Sep 14  (Deposition) - 31 Dec 14  (Release) - 14 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Nhr, Nr1H2, Lxr-B, Lxrb, Unr, Ner-I, Rip15, Ner, Ligand Binding Domain, Nuclear Hormone Receptor, Rxr, Transcription-Agonist Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Kick, R. Martin, Y. Xie, B. Flatt, E. Schweiger, T. L. Wang, B. Busch, M. Nyman, X. H. Gu, G. Yan, B. Wagner, M. Nanao, L. Nguyen, T. Stout, A. Plonowski, I. Schulman, J. Ostrowski, T. Kirchgessner, R. Wexler, R. Mohan
Liver X Receptor (Lxr) Partial Agonists: Biaryl Pyrazoles And Imidazoles Displaying A Preference For Lxr Beta.
Bioorg. Med. Chem. Lett. V. 25 372 2015
PubMed-ID: 25435151  |  Reference-DOI: 10.1016/J.BMCL.2014.11.029

(-) Compounds

Molecule 1 - OXYSTEROLS RECEPTOR LXR-BETA
    Chains: A, B
    Engineered: YES
    Fragment: UNP RESIDUES 213-460
    Gene: NR1H2, LXRB, NER, UNR
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LIVER X RECEPTOR BETA, NUCLEAR RECEPTOR NER, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP H MEMBER 2, UBIQUITOUSLY-EXPRESSED NUCLEAR RECEPTOR

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
16522Ligand/Ion2-{2-[2-(2-CHLOROPHENYL)PROPAN-2-YL]-1-[3'-(METHYLSULFONYL)BIPHENYL-4-YL]-1H-IMIDAZOL-4-YL}PROPAN-2-OL
2BU13Ligand/Ion1,4-BUTANEDIOL
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
16522Ligand/Ion2-{2-[2-(2-CHLOROPHENYL)PROPAN-2-YL]-1-[3'-(METHYLSULFONYL)BIPHENYL-4-YL]-1H-IMIDAZOL-4-YL}PROPAN-2-OL
2BU13Ligand/Ion1,4-BUTANEDIOL
Biological Unit 2 (2, 10)
No.NameCountTypeFull Name
16524Ligand/Ion2-{2-[2-(2-CHLOROPHENYL)PROPAN-2-YL]-1-[3'-(METHYLSULFONYL)BIPHENYL-4-YL]-1H-IMIDAZOL-4-YL}PROPAN-2-OL
2BU16Ligand/Ion1,4-BUTANEDIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:235 , GLU A:281 , PHE A:285 , GLU A:315 , ARG A:318 , ILE A:374 , HOH A:664BINDING SITE FOR RESIDUE BU1 A 501
2AC2SOFTWAREGLU A:393 , GLN A:396 , GLN A:397 , HOH A:616 , HOH A:648 , HOH A:681 , PRO B:419 , ARG B:420 , MET B:423 , LYS B:424BINDING SITE FOR RESIDUE BU1 A 502
3AC3SOFTWAREPHE A:268 , PHE A:271 , THR A:272 , LEU A:274 , ALA A:275 , ILE A:277 , SER A:278 , GLU A:281 , MET A:312 , LEU A:313 , THR A:316 , ARG A:319 , PHE A:329 , LEU A:330 , LEU A:345 , ILE A:353BINDING SITE FOR RESIDUE 652 A 503
4AC4SOFTWAREGLN B:235 , GLU B:281 , GLU B:315 , ILE B:374 , HOH B:633BINDING SITE FOR RESIDUE BU1 B 501
5AC5SOFTWAREPHE B:268 , PHE B:271 , THR B:272 , LEU B:274 , ALA B:275 , SER B:278 , GLU B:281 , ILE B:309 , LEU B:313 , THR B:316 , ARG B:319 , PHE B:329 , LEU B:330 , PHE B:340 , HIS B:435 , LEU B:449 , TRP B:457BINDING SITE FOR RESIDUE 652 B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RAK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RAK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RAK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RAK)

(-) Exons   (0, 0)

(no "Exon" information available for 4RAK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhee....eeee...eeehhhhhhh......hhhhhhhhhhhhhh...hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rak A 218 VQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRKLPPLLSEIW 457
                                   227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437     ||451      
                                                                                                                                                                                                                                                           443|         
                                                                                                                                                                                                                                                            448         


Chain B from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhee....eeee...eeeehhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rak B 219 QLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWD 458
                                   228       238       248    || 266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456  
                                                            253|                                                                                                                                                                                                    
                                                             262
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RAK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RAK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RAK)

(-) Gene Ontology  (50, 50)

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 Related Entries

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UniProtKB/Swiss-Prot
        NR1H2_HUMAN | P55055: 1p8d 1pq6 1pq9 1pqc 1upv 1upw 3kfc 3l0e 4dk7 4dk8 4nqa 5hjp 5i4v 5jy3 5kya 5kyj

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