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(-) Description

Title :  CRYSTAL STRUCTURE OF RV1600 ENCODED AMINOTRANSFERASE IN COMPLEX WITH PLP-MES FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  N. Nasir, A. Anant, R. Vyas, B. K. Biswal
Date :  01 Sep 14  (Deposition) - 02 Sep 15  (Release) - 02 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Histidinol Phosphate Aminotransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Nasir, A. Anant, R. Vyas, B. K. Biswal
Crystal Structure Of Rv1600 Encoded Aminotransferase In Complex With Plp-Mes From Mycobacterium Tuberculosis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HISTIDINOL-PHOSPHATE AMINOTRANSFERASE
    Chains: A, B
    EC Number: 2.6.1.9
    Engineered: YES
    Expression System: MYCOBACTERIUM SMEGMATIS
    Expression System Plasmid: PYUB1062
    Expression System Strain: MC24517
    Expression System Taxid: 1772
    Expression System Vector Type: PLASMID
    Gene: HISC, P425_01659, RVBD_1600
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS H37RV
    Organism Taxid: 83332
    Strain: H37RV
    Synonym: IMIDAZOLE ACETOL-PHOSPHATE TRANSAMINASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PLP2Ligand/IonPYRIDOXAL-5'-PHOSPHATE
3SO44Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:101 , SER A:102 , ASN A:103 , TYR A:127 , ASN A:176 , ASP A:201 , ALA A:203 , TYR A:204 , THR A:229 , SER A:231 , LYS A:232 , ARG A:240 , MES A:402 , HOH A:581 , TYR B:67BINDING SITE FOR RESIDUE PLP A 401
2AC2SOFTWARETYR A:25 , ASN A:37 , THR A:38 , ASN A:39 , ASN A:103 , TYR A:127 , MET A:129 , ASN A:176 , ARG A:337 , ARG A:346 , PLP A:401 , SO4 A:403 , HOH A:601 , TYR B:67 , PRO B:260 , TYR B:261BINDING SITE FOR RESIDUE MES A 402
3AC3SOFTWARETYR A:25 , GLY A:26 , ALA A:27 , ARG A:337 , MES A:402 , ARG B:70 , TYR B:261BINDING SITE FOR RESIDUE SO4 A 403
4AC4SOFTWAREALA A:17 , GLU A:59 , HOH A:551 , HOH A:613 , ARG B:118 , HOH B:555BINDING SITE FOR RESIDUE SO4 A 404
5AC5SOFTWAREARG A:118 , HOH A:574 , ALA B:17BINDING SITE FOR RESIDUE SO4 A 405
6AC6SOFTWARETYR A:67 , GLY B:101 , SER B:102 , ASN B:103 , TYR B:127 , ASN B:176 , ASP B:201 , ALA B:203 , TYR B:204 , THR B:229 , SER B:231 , LYS B:232 , ARG B:240 , HOH B:592BINDING SITE FOR RESIDUE PLP B 401
7AC7SOFTWARETYR A:67 , TYR B:25 , ASN B:37 , THR B:38 , ASN B:39 , ASN B:103 , TYR B:127 , MET B:129 , ASN B:176 , ARG B:337 , ARG B:346 , SO4 B:403BINDING SITE FOR RESIDUE MES B 402
8AC8SOFTWAREARG A:70 , TYR A:261 , TYR B:25 , GLY B:26 , ALA B:27 , ARG B:337 , MES B:402BINDING SITE FOR RESIDUE SO4 B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R8D)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Val A:124 -Pro A:125
2Ser A:173 -Pro A:174
3Asn A:176 -Pro A:177
4Gly A:317 -Glu A:318
5Val B:124 -Pro B:125
6Ser B:173 -Pro B:174
7Asn B:176 -Pro B:177
8Gly B:317 -Glu B:318

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R8D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R8D)

(-) Exons   (0, 0)

(no "Exon" information available for 4R8D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:369
                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh..hhhhh.............ee..........hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh...hhh.eeeehhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhh..eeeeee.......hhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhh..eeeee..hhhhh...hhhhhh......eeeeee......hhhhh.eeee.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee......eeeee...hhhhhhhhhhhh.ee........eeeee..hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r8d A   5 GHPVTLDDLPLRADLRGKAPYGAPQLAVPVRLNTNENPHPPTRALVDDVVRSVREAAIDLHRYPDRDAVALRADLAGYLTAQTGIQLGVENIWAANGSNEILQQLLQAFGGPGRSAIGFVPSYSMHPIISDGTHTEWIEASRANDFGLDVDVAVAAVVDRKPDVVFIASPNNPSGQSVSLPDLCKLLDVAPGIAIVDEAYGEFSSQPSAVSLVEEYPSKLVVTRTMSKAFAFAGGRLGYLIATPAVIDAMLLVRLPYHLSSVTQAAARAALRHSDDTLSSVAALIAERERVTTSLNDMGFRVIPSDANFVLFGEFADAPAAWRRYLEAGILIRDVGIPGYLRATTGLAEENDAFLRASARIATDLVPVT 373
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364         


Chain B from PDB  Type:PROTEIN  Length:365
                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh..hhhhh.............ee..........hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh...hhh.eeeehhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhh..eeeeee.......hhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhh..eeeee..hhhhh...hhhhhh......eeeeee......hhhhh.eeee.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee......eeeee...hhhhhhhhhhhh.ee........eeeee..hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r8d B   7 PVTLDDLPLRADLRGKAPYGAPQLAVPVRLNTNENPHPPTRALVDDVVRSVREAAIDLHRYPDRDAVALRADLAGYLTAQTGIQLGVENIWAANGSNEILQQLLQAFGGPGRSAIGFVPSYSMHPIISDGTHTEWIEASRANDFGLDVDVAVAAVVDRKPDVVFIASPNNPSGQSVSLPDLCKLLDVAPGIAIVDEAYGEFSSQPSAVSLVEEYPSKLVVTRTMSKAFAFAGGRLGYLIATPAVIDAMLLVRLPYHLSSVTQAAARAALRHSDDTLSSVAALIAERERVTTSLNDMGFRVIPSDANFVLFGEFADAPAAWRRYLEAGILIRDVGIPGYLRATTGLAEENDAFLRASARIATDLVP 371
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R8D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R8D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R8D)

(-) Gene Ontology  (13, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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