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(-) Description

Title :  STREPTOMYCES GLOBISPORUS C-1027 NADH:FAD OXIDOREDUCTASE SGCE6 IN COMPLEX WITH NAD AND FAD FRAGMENTS
 
Authors :  K. Tan, L. Bigelow, S. Clancy, G. Babnigg, C. A. Bingman, R. Yennamalli, J. R. Lohman, M. Ma, B. Shen, G. N. Phillips Jr. , A. Joachimiak, Midwes For Structural Genomics (Mcsg), Enzyme Discovery For Natural Biosynthesis (Natpro)
Date :  29 Aug 14  (Deposition) - 01 Oct 14  (Release) - 02 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.66
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Y. Chang, J. R. Lohman, H. Cao, K. Tan, J. D. Rudolf, M. Ma, W. Xu, C. A. Bingman, R. M. Yennamalli, L. Bigelow, G. Babnigg, X. Yan, A. Joachimiak, G. N. Phillips, B. Shen
Crystal Structures Of Sgce6 And Sgcc, The Two-Component Monooxygenase That Catalyzes Hydroxylation Of A Carrier Protein-Tethered Substrate During The Biosynthesis Of The Enediyne Antitumor Antibiotic C-1027 In Streptomyces Globisporus.
Biochemistry V. 55 5142 2016
PubMed-ID: 27560143  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00713

(-) Compounds

Molecule 1 - OXIDOREDUCTASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG73
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOMYCES GLOBISPORUS
    Organism Taxid: 1908

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 22)

Asymmetric/Biological Unit (7, 22)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CA3Ligand/IonCALCIUM ION
3CL2Ligand/IonCHLORIDE ION
4FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
5MG1Ligand/IonMAGNESIUM ION
6MSE6Mod. Amino AcidSELENOMETHIONINE
7NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:21 , PHE A:24 , GLY A:25 , ASN A:47 , HIS A:143 , GLY A:167 , NAD A:202 , HOH A:307 , HOH A:322 , HOH A:375 , HOH A:381 , HOH A:392 , HOH A:395 , LEU B:54 , HOH B:361 , HOH B:374BINDING SITE FOR RESIDUE NAD A 201
02AC2SOFTWAREARG A:21 , HIS A:143 , NAD A:201 , FAD A:209 , HOH A:307 , HOH A:375 , ASP B:16 , CA B:203 , HOH B:308 , HOH B:361 , HOH B:374 , HOH B:397 , HOH B:399BINDING SITE FOR RESIDUE NAD A 202
03AC3SOFTWAREASP A:16 , HOH A:350 , HOH A:365 , NAD B:202 , HOH B:353 , HOH B:398BINDING SITE FOR RESIDUE CA A 203
04AC4SOFTWAREARG A:17 , ARG A:21 , ARG B:17 , LEU B:54BINDING SITE FOR RESIDUE CL A 204
05AC5SOFTWARESER A:165 , GLY A:166 , ARG A:170 , HOH A:328 , ARG B:159 , GLU B:160 , CA B:204 , HOH B:311BINDING SITE FOR RESIDUE ACT A 205
06AC6SOFTWAREGLN A:88 , LYS A:90 , ALA A:91BINDING SITE FOR RESIDUE ACT A 206
07AC7SOFTWAREGLU A:139 , GLY A:141 , HIS B:135 , ARG B:136BINDING SITE FOR RESIDUE ACT A 207
08AC8SOFTWAREPHE A:49 , THR A:50 , HOH A:306 , PHE B:49 , THR B:50 , HOH B:425BINDING SITE FOR RESIDUE MG A 208
09AC9SOFTWAREMSE A:44 , THR A:45 , ALA A:46 , ASN A:47 , SER A:48 , CYS A:62 , VAL A:63 , GLY A:64 , ALA A:67 , ALA A:96 , HIS A:98 , PHE A:164 , NAD A:202 , HOH A:310 , HOH A:335BINDING SITE FOR RESIDUE FAD A 209
10BC1SOFTWARELEU A:54 , HOH A:380 , ARG B:21 , PHE B:24 , ASN B:47 , HIS B:143 , GLY B:167 , NAD B:202 , HOH B:310 , HOH B:338 , HOH B:375 , HOH B:389 , HOH B:398BINDING SITE FOR RESIDUE NAD B 201
11BC2SOFTWAREASP A:16 , CA A:203 , HOH A:350 , ARG B:21 , HIS B:143 , NAD B:201 , FAD B:207 , HOH B:353 , HOH B:398 , HOH B:409 , HOH B:420BINDING SITE FOR RESIDUE NAD B 202
12BC3SOFTWARENAD A:202 , ASP B:16 , HOH B:324 , HOH B:374 , HOH B:397 , HOH B:399BINDING SITE FOR RESIDUE CA B 203
13BC4SOFTWAREACT A:205 , HOH A:328 , HOH A:411 , PRO B:157 , ARG B:159 , HOH B:311 , HOH B:400BINDING SITE FOR RESIDUE CA B 204
14BC5SOFTWAREARG A:17 , LEU A:54 , ARG B:17 , ARG B:21BINDING SITE FOR RESIDUE CL B 205
15BC6SOFTWARELEU B:122 , HIS B:129 , THR B:154 , TRP B:156 , HOH B:331BINDING SITE FOR RESIDUE ACT B 206
16BC7SOFTWAREMSE B:44 , THR B:45 , ALA B:46 , ASN B:47 , SER B:48 , CYS B:62 , VAL B:63 , GLY B:64 , ALA B:67 , VAL B:68 , ALA B:96 , PHE B:164 , NAD B:202 , HOH B:371 , HOH B:373 , HOH B:391BINDING SITE FOR RESIDUE FAD B 207

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R82)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:55 -Pro A:56
2Ser B:55 -Pro B:56

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R82)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R82)

(-) Exons   (0, 0)

(no "Exon" information available for 4R82)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...hhhhhhhhhh......eeeee.....eeeee...eeee....eeeeeee..hhhhhhhhhh.eeeeee....hhhhhhhh............eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee.......eee..eee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r82 A   8 PAELVDPKDRVQLRRVFGDFPTGVTVVTVGGSEPRGmTANSFTSVSLSPPLVLICVGKDAVmHQRLTALPTFAVSVLEAGQEKAARHFADHSVDQFDTVDWVLGEESGAPLIAGAVAHLECAIHRLYEGGDHTIFLGEVITATRWPAREGmLFSGGRFRRFAPDAD 177
                                    17        27        37      | 47        57        67 |      77        87        97 ||    111       121       131       141       151       161|      171      
                                                               44-MSE                   69-MSE                        99|                                                       162-MSE           
                                                                                                                      104                                                                         


Chain B from PDB  Type:PROTEIN  Length:165
                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...hhhhhhhhhh......eeeee.....eeeee...eeee....eeeeeee..hhhhhhhhhh.eeeeee....hhhhhhhh............eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee.......eee..eee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r82 B   9 AELVDPKDRVQLRRVFGDFPTGVTVVTVGGSEPRGmTANSFTSVSLSPPLVLICVGKDAVmHQRLTALPTFAVSVLEAGQEKAARHFADHSVDQFDTVDWVLGEESGAPLIAGAVAHLECAIHRLYEGGDHTIFLGEVITATRWPAREGmLFSGGRFRRFAPDAD 177
                                    18        28        38     |  48        58        68|       78        88        98||     112       122       132       142       152       162       172     
                                                              44-MSE                   69-MSE                        99|                                                       162-MSE           
                                                                                                                     104
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R82)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R82)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R82)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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        Q8GME2_STRGL | Q8GME2: 4hx6

(-) Related Entries Specified in the PDB File

4hx6 4oo2