4HX6 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   STREPTOMYCES GLOBISPORUS C-1027 NADH:FAD OXIDOREDUCTASE SGCE6

Authors :   K. Tan, L. Bigelow, S. Clancy, G. Babnigg, C. A. Bingman, R. Yennamalli, J. R. Lohman, M. Ma, B. Shen, G. N. Phillips Jr. , A. Joachimiak, Midwes For Structural Genomics (Mcsg), Enzyme Discovery For Natural Biosynthesis (Natpro)

Date :   09 Nov 12 (Deposition) - 28 Nov 12 (Release) - 07 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.89

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)

Keywords :   Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Y. Chang, J. R. Lohman, H. Cao, K. Tan, J. D. Rudolf, M. Ma, W. Xu, C. A. Bingman, R. M. Yennamalli, L. Bigelow, G. Babnigg, X. Yan, A. Joachimiak, G. N. Phillips, B. Shen
Crystal Structures Of Sgce6 And Sgcc, The Two-Component Monooxygenase That Catalyzes Hydroxylation Of A Carrier Protein-Tethered Substrate During The Biosynthesis Of The Enediyne Antitumor Antibiotic C-1027 In Streptomyces Globisporus.
Biochemistry V. 55 5142 2016
PubMed-ID: 27560143 | Reference-DOI: 10.1021/ACS.BIOCHEM.6B00713

Molecule 1 - OXIDOREDUCTASE
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE)MAGIC
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	STREPTOMYCES GLOBISPORUS
	Mutation	:	YES
	Organism Scientific	:	STREPTOMYCES GLOBISPORUS
	Organism Taxid	:	1908

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 39)

No.	Name	Count	Type	Full Name
1	ACT	5	Ligand/Ion	ACETATE ION
2	MSE	28	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 10)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 12)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 10)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 4 (2, 7)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:42 , MSE A:44 , ALA A:67 , VAL A:68 , MSE A:69 , HIS A:98 , HOH A:308 , HOH A:334 , HOH A:361 , HOH A:370	BINDING SITE FOR RESIDUE SO4 A 201
02	AC2	SOFTWARE	SER A:51 , VAL A:52 , LEU A:54	BINDING SITE FOR RESIDUE ACT A 202
03	AC3	SOFTWARE	ASN B:47 , HOH B:368	BINDING SITE FOR RESIDUE ACT B 201
04	AC4	SOFTWARE	ARG C:17 , ARG C:21	BINDING SITE FOR RESIDUE SO4 C 201
05	AC5	SOFTWARE	VAL C:68 , MSE C:69 , HOH C:339	BINDING SITE FOR RESIDUE ACT C 202
06	AC6	SOFTWARE	PHE C:24 , HIS C:143 , SER D:51 , VAL D:52 , SER D:53 , LEU D:54 , HOH D:383 , HOH D:409	BINDING SITE FOR RESIDUE SO4 D 201
07	AC7	SOFTWARE	MSE D:1 , SER D:2 , HIS F:143 , HOH F:351	BINDING SITE FOR RESIDUE ACT D 202
08	AC8	SOFTWARE	ARG D:168 , HOH D:404 , ALA E:124 , GLY E:125 , TRP E:156 , ARG E:159 , HOH E:341 , HOH E:383 , ALA F:6	BINDING SITE FOR RESIDUE SO4 E 201
09	AC9	SOFTWARE	ARG E:42 , VAL E:68 , MSE E:69 , HOH E:350	BINDING SITE FOR RESIDUE ACT E 202
10	BC1	SOFTWARE	ASN D:-1 , ARG F:17 , ARG F:21	BINDING SITE FOR RESIDUE SO4 F 201
11	BC2	SOFTWARE	MSE H:44 , ALA H:67 , VAL H:68 , MSE H:69 , HOH H:321	BINDING SITE FOR RESIDUE SO4 H 201

(no "SS Bond" information available for 4HX6)

Asymmetric Unit

No.	Residues
1	Ser A:55	-	Pro A:56
2	Ser B:55	-	Pro B:56
3	Ser C:2	-	Pro C:3
4	Ser C:55	-	Pro C:56
5	Ser D:55	-	Pro D:56
6	Ser E:55	-	Pro E:56
7	Ser F:55	-	Pro F:56
8	Pro G:7	-	Pro G:8
9	Ser G:55	-	Pro G:56
10	Pro H:7	-	Pro H:8
11	Ser H:55	-	Pro H:56

(no "SAP(SNP)/Variant" information available for 4HX6)

(no "PROSITE Motif" information available for 4HX6)

(no "Exon" information available for 4HX6)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh...eee...hhhhhhhhhh......eeeee.....eeeee...eeee....eeeeeee..hhhhhhhhhh.eeeeee....hhhhhhhh................eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee.......eee..eee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hx6 A  -1 NAmSPIIAPPAELVDPKDRVQLRRVFGDFPTGVTVVTVGGSEPRGmTANSFTSVSLSPPLVLICVGKDAVmHQRLTALPTFAVSVLEAGQEKAARHFADHSHPPGVDQFDTVDWVLGEESGAPLIAGAVAHLECAIHRLYEGGDHTIFLGEVITATRWPAREGmLFSGGRFRRFAPD 175
                              |      8        18        28        38     |  48        58        68|       78        88        98       108       118       128       138       148       158   |   168       
                              |                                         44-MSE                   69-MSE                                                                                      162-MSE         
                              1-MSE

Chain B from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains d4hx6b_ B: automated matches                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...hhhhhhhhhh......eeeee.....eeeee...eeee....eeeeeee..hhhhhhhhhh.eeeeee....hhhhhhhh..............eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee.......eee..eee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hx6 B   8 PAELVDPKDRVQLRRVFGDFPTGVTVVTVGGSEPRGmTANSFTSVSLSPPLVLICVGKDAVmHQRLTALPTFAVSVLEAGQEKAARHFASHPPGVDQFDTVDWVLGEESGAPLIAGAVAHLECAIHRLYEGGDHTIFLGEVITATRWPAREGmLFSGGRFRRFAPDA 176
                                    17        27        37      | 47        57        67 |      77        87        99       109       119       129       139       149       159  |    169       
                                                               44-MSE                   69-MSE                     96|                                                            162-MSE          
                                                                                                                    99

Chain C from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee...hhhhhhhhhhh..ee.eeeee.....eeeee...eeee....eeeeeee..hhhhhhhhhh.eeeeee....hhhhhhhh.........eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee.......eee..eee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hx6 C   0 AmSPIIAPPAELVDPKDRVQLRRVFGDFPTGVTVVTVGGSEPRGmTANSFTSVSLSPPLVLICVGKDAVmHQRLTALPTFAVSVLEAGQEKAARHFADDQFDTVDWVLGEESGAPLIAGAVAHLECAIHRLYEGGDHTIFLGEVITATRWPAREGmLFSGGRFRRFAPDADE 178
                             |       9        19        29        39    |   49        59        69        79        89       106       116       126       136       146       156     | 166       176  
                             1-MSE                                     44-MSE                   69-MSE                      97|                                                      162-MSE            
                                                                                                                            105

Chain D from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee...hhhhhhhhhh......eeeee.....eeeee...eeee....eeeeeee..hhhhhhhhhh.eeeeee....hhhhhhhhhh..............eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee.......eee..eee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hx6 D  -1 NAmSPIIAPPAELVDPKDRVQLRRVFGDFPTGVTVVTVGGSEPRGmTANSFTSVSLSPPLVLICVGKDAVmHQRLTALPTFAVSVLEAGQEKAARHFADHSHPPGVDQFDTVDWVLGEESGAPLIAGAVAHLECAIHRLYEGGDHTIFLGEVITATRWPAREGmLFSGGRFRRFAPD 175
                              |      8        18        28        38     |  48        58        68|       78        88        98       108       118       128       138       148       158   |   168       
                              1-MSE                                     44-MSE                   69-MSE                                                                                      162-MSE

Chain E from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee...hhhhhhhhhh......eeeee.....eeeee...eeee....eeeeeee..hhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhh.eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee.......eee..eee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hx6 E   3 PIIAPPAELVDPKDRVQLRRVFGDFPTGVTVVTVGGSEPRGmTANSFTSVSLSPPLVLICVGKDAVmHQRLTALPTFAVSVLEAGQEKAARHFADDQFDTVDWVLGEESGAPLIAGAVAHLECAIHRLYEGGDHTIFLGEVITATRWPAREGmLFSGGRFRRFAPDADEGR 180
                                    12        22        32        42 |      52        62      | 72        82        92    || 109       119       129       139       149       159  |    169       179 
                                                                    44-MSE                   69-MSE                      97|                                                      162-MSE              
                                                                                                                         105

Chain F from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh....eee...hhhhhhhhhh...ee.eeeee.....eeeee...eeee....eeeeeee..hhhhhhhhhh.eeeeee....hhhhhhhhhh..............eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee.......eee..eee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hx6 F   0 AmSPIIAPPAELVDPKDRVQLRRVFGDFPTGVTVVTVGGSEPRGmTANSFTSVSLSPPLVLICVGKDAVmHQRLTALPTFAVSVLEAGQEKAARHFADHSHPPGVDQFDTVDWVLGEESGAPLIAGAVAHLECAIHRLYEGGDHTIFLGEVITATRWPAREGmLFSGGRFRRFAPD 175
                             |       9        19        29        39    |   49        59        69        79        89        99       109       119       129       139       149       159  |    169      
                             1-MSE                                     44-MSE                   69-MSE                                                                                      162-MSE

Chain G from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains d4hx6g_ G: automated matches                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...hhhhhhhhhh......eeeee.....eeeee..eeeee....eeeeeee..hhhhhhhhhh.eeeeee....hhhhhhhh................eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee.......eee..eee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hx6 G   7 PPAELVDPKDRVQLRRVFGDFPTGVTVVTVGGSEPRGmTANSFTSVSLSPPLVLICVGKDAVmHQRLTALPTFAVSVLEAGQEKAARHFADHSHPPGVDQFDTVDWVLGEESGAPLIAGAVAHLECAIHRLYEGGDHTIFLGEVITATRWPAREGmLFSGGRFRRFAPD 175
                                    16        26        36       |46        56        66  |     76        86        96       106       116       126       136       146       156     | 166         
                                                                44-MSE                   69-MSE                                                                                      162-MSE

Chain H from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains d4hx6h_ H: automated matches                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...hhhhhhhhhh......eeeee.....eeeee...eeee....eeeeeee..hhhhhhhhhh.eeeeee....hhhhhhhh..............eee......eee....eeeeeeeeeeeee..eeeeeeeeeeeee.......eee..eee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hx6 H   7 PPAELVDPKDRVQLRRVFGDFPTGVTVVTVGGSEPRGmTANSFTSVSLSPPLVLICVGKDAVmHQRLTALPTFAVSVLEAGQEKAARHFADHPPGVDQFDTVDWVLGEESGAPLIAGAVAHLECAIHRLYEGGDHTIFLGEVITATRWPAREGmLFSGGRFRRFAP 174
                                    16        26        36       |46        56        66  |     76        86        96||     108       118       128       138       148       158   |   168      
                                                                44-MSE                   69-MSE                      97|                                                           162-MSE        
                                                                                                                     100

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Split barrel-like (99)

Superfamily: FMN-binding split barrel (90)

Family: automated matches (24)

Protein domain: automated matches (24)

Streptomyces globisporus [TaxId: 1908] (1)

1a	d4hx6b_	B:
1b	d4hx6g_	G:
1c	d4hx6h_	H:

(no "CATH Domain" information available for 4HX6)

(no "Pfam Domain" information available for 4HX6)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Pro G:7 - Pro G:8	[ RasMol ]
		Pro H:7 - Pro H:8	[ RasMol ]
		Ser A:55 - Pro A:56	[ RasMol ]
		Ser B:55 - Pro B:56	[ RasMol ]
		Ser C:2 - Pro C:3	[ RasMol ]
		Ser C:55 - Pro C:56	[ RasMol ]
		Ser D:55 - Pro D:56	[ RasMol ]
		Ser E:55 - Pro E:56	[ RasMol ]
		Ser F:55 - Pro F:56	[ RasMol ]
		Ser G:55 - Pro G:56	[ RasMol ]
		Ser H:55 - Pro H:56	[ RasMol ]

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		Biological Unit 4	[ Jena3D ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 39)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (11, 11)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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