4R0D - JenaLib

Asymmetric Unit (110, 110)

No.	Name	Evidence	Residues	Description
001	AC1	SOFTWARE	A A:20 , A A:21 , G A:23	BINDING SITE FOR RESIDUE SPM A 701
002	AC2	SOFTWARE	G A:517 , U A:518 , C A:531 , U A:533	BINDING SITE FOR RESIDUE SPM A 702
003	AC3	SOFTWARE	A A:17 , G A:18	BINDING SITE FOR RESIDUE IRI A 703
004	AC4	SOFTWARE	U A:170 , A A:171 , C A:554 , U A:569 , C A:570	BINDING SITE FOR RESIDUE IRI A 704
005	AC5	SOFTWARE	U A:294	BINDING SITE FOR RESIDUE IRI A 706
006	AC6	SOFTWARE	U A:520 , G A:521	BINDING SITE FOR RESIDUE IRI A 707
007	AC7	SOFTWARE	G A:431 , C A:491 , G A:493	BINDING SITE FOR RESIDUE IRI A 708
008	AC8	SOFTWARE	G A:10 , U A:14 , U A:15 , G A:338 , G A:339	BINDING SITE FOR RESIDUE IRI A 709
009	AC9	SOFTWARE	A A:6 , C A:495 , U A:496 , C A:578	BINDING SITE FOR RESIDUE IRI A 710
010	BC1	SOFTWARE	A A:165 , U A:166 , G A:167 , G A:168 , HOH A:982	BINDING SITE FOR RESIDUE IRI A 711
011	BC2	SOFTWARE	U A:183 , U A:301	BINDING SITE FOR RESIDUE IRI A 712
012	BC3	SOFTWARE	G A:114	BINDING SITE FOR RESIDUE IRI A 713
013	BC4	SOFTWARE	G A:148 , MG A:761	BINDING SITE FOR RESIDUE IRI A 714
014	BC5	SOFTWARE	U A:508	BINDING SITE FOR RESIDUE IRI A 716
015	BC6	SOFTWARE	G A:593 , U A:608 , HOH A:1005	BINDING SITE FOR RESIDUE IRI A 717
016	BC7	SOFTWARE	G A:382 , G A:383	BINDING SITE FOR RESIDUE IRI A 718
017	BC8	SOFTWARE	U A:347 , A A:348 , A A:349 , G A:415	BINDING SITE FOR RESIDUE IRI A 720
018	BC9	SOFTWARE	G A:346	BINDING SITE FOR RESIDUE IRI A 721
019	CC1	SOFTWARE	C A:342 , U A:343	BINDING SITE FOR RESIDUE IRI A 722
020	CC2	SOFTWARE	U A:100	BINDING SITE FOR RESIDUE IRI A 723
021	CC3	SOFTWARE	G A:180 , U A:183 , A A:184 , IRI A:725	BINDING SITE FOR RESIDUE IRI A 724
022	CC4	SOFTWARE	U A:164 , C A:179 , G A:180 , A A:182 , IRI A:724	BINDING SITE FOR RESIDUE IRI A 725
023	CC5	SOFTWARE	U A:158 , G A:325	BINDING SITE FOR RESIDUE IRI A 726
024	CC6	SOFTWARE	G A:37 , U A:38 , A A:324	BINDING SITE FOR RESIDUE IRI A 727
025	CC7	SOFTWARE	A A:458 , G A:459	BINDING SITE FOR RESIDUE IRI A 729
026	CC8	SOFTWARE	G A:33 , A A:35 , HOH A:904 , HOH A:995	BINDING SITE FOR RESIDUE IRI A 730
027	CC9	SOFTWARE	A A:371 , U A:461	BINDING SITE FOR RESIDUE IRI A 731
028	DC1	SOFTWARE	G A:588 , G A:589 , G A:590	BINDING SITE FOR RESIDUE IRI A 732
029	DC2	SOFTWARE	G A:379 , G A:380	BINDING SITE FOR RESIDUE IRI A 733
030	DC3	SOFTWARE	G A:385 , U A:386	BINDING SITE FOR RESIDUE IRI A 734
031	DC4	SOFTWARE	G A:227	BINDING SITE FOR RESIDUE IRI A 735
032	DC5	SOFTWARE	U A:262 , G A:263 , G A:264	BINDING SITE FOR RESIDUE IRI A 736
033	DC6	SOFTWARE	G A:266	BINDING SITE FOR RESIDUE IRI A 737
034	DC7	SOFTWARE	G A:448 , U A:449 , C A:452	BINDING SITE FOR RESIDUE IRI A 738
035	DC8	SOFTWARE	G A:81 , U A:82 , G A:391 , C A:392 , A A:393	BINDING SITE FOR RESIDUE IRI A 739
036	DC9	SOFTWARE	U A:26 , G A:28 , G A:88	BINDING SITE FOR RESIDUE IRI A 740
037	EC1	SOFTWARE	G A:550 , A A:551 , G A:552 , A A:574 , MG A:742 , C B:14	BINDING SITE FOR RESIDUE MG A 741
038	EC2	SOFTWARE	G A:552 , C A:572 , A A:574 , MG A:741 , A B:13 , C B:14	BINDING SITE FOR RESIDUE MG A 742
039	EC3	SOFTWARE	U A:2 , C A:4 , G A:5	BINDING SITE FOR RESIDUE MG A 743
040	EC4	SOFTWARE	A A:6 , C A:7 , A A:341 , HOH A:1002	BINDING SITE FOR RESIDUE MG A 744
041	EC5	SOFTWARE	A A:359	BINDING SITE FOR RESIDUE MG A 745
042	EC6	SOFTWARE	A A:340 , HOH A:1009	BINDING SITE FOR RESIDUE MG A 746
043	EC7	SOFTWARE	G A:524 , C A:527	BINDING SITE FOR RESIDUE MG A 749
044	EC8	SOFTWARE	G A:430 , G A:431	BINDING SITE FOR RESIDUE MG A 750
045	EC9	SOFTWARE	C A:353	BINDING SITE FOR RESIDUE MG A 751
046	FC1	SOFTWARE	A A:410	BINDING SITE FOR RESIDUE MG A 752
047	FC2	SOFTWARE	G A:564	BINDING SITE FOR RESIDUE MG A 754
048	FC3	SOFTWARE	U A:260	BINDING SITE FOR RESIDUE MG A 755
049	FC4	SOFTWARE	U A:14 , C A:109	BINDING SITE FOR RESIDUE MG A 756
050	FC5	SOFTWARE	HOH A:1001	BINDING SITE FOR RESIDUE MG A 757
051	FC6	SOFTWARE	A A:303 , G A:304	BINDING SITE FOR RESIDUE MG A 760
052	FC7	SOFTWARE	IRI A:714	BINDING SITE FOR RESIDUE MG A 761
053	FC8	SOFTWARE	G A:28	BINDING SITE FOR RESIDUE MG A 764
054	FC9	SOFTWARE	U A:332 , U A:333	BINDING SITE FOR RESIDUE MG A 766
055	GC1	SOFTWARE	U A:504	BINDING SITE FOR RESIDUE MG A 768
056	GC2	SOFTWARE	G A:103	BINDING SITE FOR RESIDUE MG A 769
057	GC3	SOFTWARE	U A:247	BINDING SITE FOR RESIDUE MG A 771
058	GC4	SOFTWARE	U A:449 , HOH A:983	BINDING SITE FOR RESIDUE MG A 772
059	GC5	SOFTWARE	G A:505	BINDING SITE FOR RESIDUE MG A 774
060	GC6	SOFTWARE	C A:553	BINDING SITE FOR RESIDUE MG A 776
061	GC7	SOFTWARE	A A:184 , G A:302 , A A:303	BINDING SITE FOR RESIDUE MG A 777
062	GC8	SOFTWARE	G A:568	BINDING SITE FOR RESIDUE MG A 778
063	GC9	SOFTWARE	G A:60	BINDING SITE FOR RESIDUE MG A 779
064	HC1	SOFTWARE	G A:198 , U A:199	BINDING SITE FOR RESIDUE MG A 781
065	HC2	SOFTWARE	G A:198 , HOH A:994	BINDING SITE FOR RESIDUE MG A 782
066	HC3	SOFTWARE	C A:375 , U A:481	BINDING SITE FOR RESIDUE MG A 783
067	HC4	SOFTWARE	G A:106 , C A:107	BINDING SITE FOR RESIDUE MG A 784
068	HC5	SOFTWARE	HOH A:1003	BINDING SITE FOR RESIDUE MG A 785
069	HC6	SOFTWARE	G A:33 , A A:34 , A A:35 , HOH A:992	BINDING SITE FOR RESIDUE MG A 786
070	HC7	SOFTWARE	G A:380	BINDING SITE FOR RESIDUE MG A 787
071	HC8	SOFTWARE	G A:231 , A A:232	BINDING SITE FOR RESIDUE MG A 788
072	HC9	SOFTWARE	U A:409 , A A:410 , NA A:825	BINDING SITE FOR RESIDUE MG A 790
073	IC1	SOFTWARE	G A:65 , U A:66 , HOH A:978	BINDING SITE FOR RESIDUE MG A 791
074	IC2	SOFTWARE	G A:370 , A A:372	BINDING SITE FOR RESIDUE MG A 792
075	IC3	SOFTWARE	C A:606	BINDING SITE FOR RESIDUE MG A 793
076	IC4	SOFTWARE	G A:159 , G A:317 , A A:318 , G A:325	BINDING SITE FOR RESIDUE MG A 794
077	IC5	SOFTWARE	C A:435 , A A:436	BINDING SITE FOR RESIDUE MG A 797
078	IC6	SOFTWARE	A A:436 , A A:437 , A A:438	BINDING SITE FOR RESIDUE MG A 798
079	IC7	SOFTWARE	G A:24	BINDING SITE FOR RESIDUE MG A 799
080	IC8	SOFTWARE	A A:184	BINDING SITE FOR RESIDUE MG A 800
081	IC9	SOFTWARE	A A:429 , G A:430	BINDING SITE FOR RESIDUE MG A 802
082	JC1	SOFTWARE	G A:482	BINDING SITE FOR RESIDUE MG A 803
083	JC2	SOFTWARE	U A:581	BINDING SITE FOR RESIDUE MG A 806
084	JC3	SOFTWARE	A A:433 , G A:434	BINDING SITE FOR RESIDUE MG A 807
085	JC4	SOFTWARE	HOH A:901 , HOH A:902 , HOH A:903 , HOH A:904 , HOH A:905 , HOH A:906	BINDING SITE FOR RESIDUE MG A 808
086	JC5	SOFTWARE	HOH A:907 , HOH A:908 , HOH A:909 , HOH A:910 , HOH A:911 , HOH A:912	BINDING SITE FOR RESIDUE MG A 809
087	JC6	SOFTWARE	HOH A:913 , HOH A:914 , HOH A:915 , HOH A:916 , HOH A:917 , HOH A:918	BINDING SITE FOR RESIDUE MG A 810
088	JC7	SOFTWARE	HOH A:919 , HOH A:920 , HOH A:921 , HOH A:922 , HOH A:923 , HOH A:924	BINDING SITE FOR RESIDUE MG A 811
089	JC8	SOFTWARE	A A:211 , G A:231 , A A:232 , HOH A:925 , HOH A:926 , HOH A:927 , HOH A:928 , HOH A:929 , HOH A:930	BINDING SITE FOR RESIDUE MG A 812
090	JC9	SOFTWARE	HOH A:931 , HOH A:932 , HOH A:933 , HOH A:934 , HOH A:935 , HOH A:936	BINDING SITE FOR RESIDUE MG A 813
091	KC1	SOFTWARE	HOH A:937 , HOH A:938 , HOH A:939 , HOH A:940 , HOH A:941 , HOH A:942	BINDING SITE FOR RESIDUE MG A 814
092	KC2	SOFTWARE	HOH A:943 , HOH A:944 , HOH A:945 , HOH A:946 , HOH A:947 , HOH A:948	BINDING SITE FOR RESIDUE MG A 815
093	KC3	SOFTWARE	HOH A:949 , HOH A:950 , HOH A:951 , HOH A:952 , HOH A:953 , HOH A:954	BINDING SITE FOR RESIDUE MG A 816
094	KC4	SOFTWARE	HOH A:955 , HOH A:956 , HOH A:957 , HOH A:958 , HOH A:959 , HOH A:960	BINDING SITE FOR RESIDUE MG A 817
095	KC5	SOFTWARE	HOH A:961 , HOH A:962 , HOH A:963 , HOH A:964 , HOH B:201 , HOH B:202	BINDING SITE FOR RESIDUE MG A 818
096	KC6	SOFTWARE	U A:328	BINDING SITE FOR RESIDUE MG A 819
097	KC7	SOFTWARE	HOH A:965 , HOH A:966 , HOH A:967 , HOH A:968 , HOH A:969 , HOH A:970	BINDING SITE FOR RESIDUE MG A 820
098	KC8	SOFTWARE	HOH A:971 , HOH A:972 , HOH A:973 , HOH A:974 , HOH A:975 , HOH A:976	BINDING SITE FOR RESIDUE MG A 821
099	KC9	SOFTWARE	G A:421 , G A:550	BINDING SITE FOR RESIDUE NA A 822
100	LC1	SOFTWARE	U A:183	BINDING SITE FOR RESIDUE NA A 824
101	LC2	SOFTWARE	C A:351 , MG A:790	BINDING SITE FOR RESIDUE NA A 825
102	LC3	SOFTWARE	C A:47	BINDING SITE FOR RESIDUE NA A 826
103	LC4	SOFTWARE	A A:115 , A A:152 , G A:153	BINDING SITE FOR RESIDUE NA A 827
104	LC5	SOFTWARE	U A:447 , G A:453	BINDING SITE FOR RESIDUE NA A 828
105	LC6	SOFTWARE	G A:469	BINDING SITE FOR RESIDUE NA A 830
106	LC7	SOFTWARE	A A:594 , A A:595 , U A:610	BINDING SITE FOR RESIDUE NA A 831
107	LC8	SOFTWARE	G A:63 , A A:64 , G A:65	BINDING SITE FOR RESIDUE NA A 832
108	LC9	SOFTWARE	G A:509 , A A:586	BINDING SITE FOR RESIDUE NA A 836
109	MC1	SOFTWARE	C A:374	BINDING SITE FOR RESIDUE NA A 837
110	MC2	SOFTWARE	U B:5 , A B:6	BINDING SITE FOR RESIDUE MG B 102

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:DNA/RNA  Length:617
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
                 4r0d A   1 GUGCGACAAGAAGUUCAGGAAGGGAUUGAGGUGAAAGUCCUCCUCCCGAAUCGUUCAUGGGAGAGUCUAUCCAGACUUGCGUAGCGAGUAAUCGCUAGGUGAGAAGCUCUGGAGACAAUGUACCUGCCCUUCAAUUGGAGGUGCCAGGGCUAGGCUUUGUUCCUAUGGCUAGCGAAAGCGAAUACAGGUUAUAGGCGUCGUGAAAACAAAACUCUUUCGACAUAAGGGAGAGGUAGAUGAGUUACCCUCCUUUUUAUGGGGUAACUGAACGAUCAAUAUCUACCGGCGUAGACUGUGAGCCUAAAGGAAACGAAUGAAAGUGUCCCUUCCUGGGAACUUGGUAAGCCCAAUAGACUCCCUCUGGGAAACCAGAGGAGGAGUAAGAGCAAUCUUACUUAUCGUCUAGUGGGUAAAAGACAUAAUAGGAAGCAAAUGCUUGGUUGUAACGAUCGAGAUAGAAUCUGUUGAUUUAAGCUGAAAGGCUGCAGACUUAUUAAAUGGGUGUUCUGCUGUAUGGCGUUCGCGCCUAAGCAGCAGAAUGCGUGAGCCGUGUGCGAUGAAAGUCGCAAGCACGGUUCUGAUGGGGGGAAAACGAGAGAUCGUCUACCUAUCCAACU 622
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190 ||    201       211       221       231 ||    245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       
                                                                                                                                                                                                                         192|                                    233|                                                                                                                                                                                                                                                                                                                                                                                                
                                                                                                                                                                                                                          194                                     238

Chain B from PDB  Type:RNA  Length:14
                                              
                 4r0d B   1 UGUUUAUUAAAAAC  14
                                    10

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

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Ligands, Modified Residues, Ions (4, 139)

Sites (110, 110)

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Related Entries Specified in the PDB File