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(-) Description

Title :  COMPLEX OF WOPR DOMAIN OF WOR1 IN CANDIDA ALBICANS WITH THE 17BP DSDNA
 
Authors :  S. Zhang, T. Zhang, J. Ding
Date :  08 Jul 14  (Deposition) - 13 Aug 14  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.99
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,C,D  (1x)
Biol. Unit 2:  B,E,F  (1x)
Keywords :  Wor1, Wopr Domain, White-Opaque Switching, Protein-Dna Recognition, Transcriptional Regulation, Dna Binding Domain, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Zhang, T. Zhang, M. Yan, J. Ding, J. Chen
Crystal Structure Of The Wopr-Dna Complex And Implications For Wor1 Function In White-Opaque Switching Of Candida Albicans.
Cell Res. 2014
PubMed-ID: 25091450  |  Reference-DOI: 10.1038/CR.2014.102

(-) Compounds

Molecule 1 - WHITE-OPAQUE REGULATOR 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETDUET
    Expression System Strain: BL21(DE3) CODON PLUS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 6-272
    Gene: WOR1, EAP2, TOS9, CAO19.12348, CAO19.4884
    Organism Common: YEAST
    Organism Scientific: CANDIDA ALBICANS SC5314
    Organism Taxid: 237561
 
Molecule 2 - DNA (5'- D(*TP*CP*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*AP*AP*CP*TP*T)-3')
    Chains: C, E
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - DNA (5'- D(*AP*AP*GP*TP*TP*AP*AP*AP*CP*TP*TP*TP*TP*TP*TP*GP*A)-3')
    Chains: D, F
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A CD  
Biological Unit 2 (1x):  B  EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4QTK)

(-) Sites  (0, 0)

(no "Site" information available for 4QTK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QTK)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Met A:220 -Glu A:221
2Glu A:221 -Gly A:222
3Gly A:222 -Lys A:223
4Glu B:221 -Gly B:222

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QTK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QTK)

(-) Exons   (0, 0)

(no "Exon" information available for 4QTK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee....hhhhhhhhhhhhhh..........hhhhhhhhh...eeeeee..................eee..eeeee...eeeeeeeee.............eeeeeeeeehhhhhhh....hhhhhhhhh...hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qtk A   6 IVPTYNGYIHNTRDALAVIQQVLDKQLEPVSRRPHERERGVLIVSGSVFVFIEQSSGIKRWTDGISWSPSRIQGRFLVYGEGLVKKTITLTTTTKELHMEGKAEKQTIHLISYYSKQDIDSGKLQRPSESDLKHVQISPALWTMV 266
                                    15        25        35        45        55        65        75        85||     211       221       231       241       251       261     
                                                                                                           86|                                                               
                                                                                                           203                                                               


Chain B from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee....hhhhhhhhhhhhhh..........hhhhhhhhh...eeeeeehhhhh.............eee..eeeee.....eeeeeeeee.............eeeeeeeeehhhhhhh....hhhhh.......hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qtk B   6 IVPTYNGYIHNTRDALAVIQQVLDKQLEPVSRRPHERERGVLIVSGSVFVFIEQSSGIKRWTDGISWSPSRIQGRFLVYGELNGLVKKTITLTTTTKELHMEGKAEKQTIHLISYYSKQDIDSGKLQRPSESDLKHVQISPALWTMVQ 267
                                    15        25        35        45        55        65        75        85 ||    209       219       229       239       249       259        
                                                                                                            87|                                                                 
                                                                                                            202                                                                 


Chain C from PDB  Type:DNA  Length:17
                                                 
                 4qtk C   1 TCAAAAAAGTTTAACTT  17
                                    10       


Chain D from PDB  Type:DNA  Length:17
                                                 
                 4qtk D   1 AAGTTAAACTTTTTTGA  17
                                    10       


Chain E from PDB  Type:DNA  Length:17
                                                 
                 4qtk E   1 TCAAAAAAGTTTAACTT  17
                                    10       


Chain F from PDB  Type:DNA  Length:17
                                                 
                 4qtk F   1 AAGTTAAACTTTTTTGA  17
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QTK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QTK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QTK)

(-) Gene Ontology  (18, 18)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu A:221 - Gly A:222   [ RasMol ]  
    Glu B:221 - Gly B:222   [ RasMol ]  
    Gly A:222 - Lys A:223   [ RasMol ]  
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 Related Entries

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UniProtKB/Swiss-Prot
        WOR1_CANAL | Q5AP80: 4qtj

(-) Related Entries Specified in the PDB File

4qtj