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(-) Description

Title :  COMPLEX OF WOPR DOMAIN OF WOR1 IN CANDIDA ALBICANS WITH THE 13BP DSDNA
 
Authors :  S. Zhang, T. Zhang, J. Ding
Date :  08 Jul 14  (Deposition) - 13 Aug 14  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Wor1, Wopr Domain, White-Opaque Switching, Protein-Dna Recognition, Transcriptional Regulation, Dna Binding Domain, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Zhang, T. Zhang, M. Yan, J. Ding, J. Chen
Crystal Structure Of The Wopr-Dna Complex And Implications For Wor1 Function In White-Opaque Switching Of Candida Albicans.
Cell Res. 2014
PubMed-ID: 25091450  |  Reference-DOI: 10.1038/CR.2014.102

(-) Compounds

Molecule 1 - WHITE-OPAQUE REGULATOR 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETDUET
    Expression System Strain: BL21(DE3) CODON PLUS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 6-272
    Gene: WOR1, EAP2, TOS9, CAO19.12348, CAO19.4884
    Organism Common: YEAST
    Organism Scientific: CANDIDA ALBICANS SC5314
    Organism Taxid: 237561
 
Molecule 2 - DNA (5'-D(*AP*AP*AP*AP*GP*TP*TP*TP*AP*AP*CP*TP*T)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - DNA (5'-D(*AP*AP*GP*TP*TP*AP*AP*AP*CP*TP*TP*TP*T)-3')
    Chains: C
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4QTJ)

(-) Sites  (0, 0)

(no "Site" information available for 4QTJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QTJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QTJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QTJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QTJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4QTJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:154
                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee....hhhhhhhhhhhhhh..........hhhhhhhhh...eeeeeehhhhh.............eee..eeeee.......eeeeeeeeee...........eeeeeeeeee.hhhhhh.......hhhhh....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qtj A   5 MIVPTYNGYIHNTRDALAVIQQVLDKQLEPVSRRPHERERGVLIVSGSVFVFIEQSSGIKRWTDGISWSPSRIQGRFLVYGELDKKGLVKKTITLTTTTKELHMEGKAEKQTIHLISYYSKQDIDSGKLQRPSESDLKHVQISPALWTMVQENS 270
                                    14        24        34        44        54        64        74        84     ||206       216       226       236       246       256       266    
                                                                                                                90|                                                                   
                                                                                                                203                                                                   


Chain B from PDB  Type:DNA  Length:13
                                             
                 4qtj B   1 AAAAGTTTAACTT  13
                                    10   


Chain C from PDB  Type:DNA  Length:13
                                             
                 4qtj C   1 AAGTTAAACTTTT  13
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QTJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QTJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QTJ)

(-) Gene Ontology  (18, 18)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        WOR1_CANAL | Q5AP80: 4qtk

(-) Related Entries Specified in the PDB File

4qtj