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(-) Description

Title :  PROTEIN DOMAIN COMPLEX WITH SSDNA
 
Authors :  X. Ni, H. Ru, L. Zhao, N. Shaw, W. Ding, O. Songying, Z. -J. Liu
Date :  25 May 14  (Deposition) - 17 Jun 15  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.54
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Ob Fold, Dna Binding, Cytosolic Dna Sensor, Cytosolic, Immune Response-Dna Complex, Transcription Activator-Dna Complex, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Ni, H. Ru, F. Ma, L. Zhao, N. Shaw, Y. Feng, W. Ding, W. Gong, Q. Wang, S. Ouyang, G. Cheng, Z. J. Liu
New Insights Into The Structural Basis Of Dna Recognition B Hina And Hinb Domains Of Ifi16.
J Mol Cell Biol V. 8 51 2016
PubMed-ID: 26246511  |  Reference-DOI: 10.1093/JMCB/MJV053

(-) Compounds

Molecule 1 - GAMMA-INTERFERON-INDUCIBLE PROTEIN 16
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: IFI16, IFNGIP1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: IFI-16, INTERFERON-INDUCIBLE MYELOID DIFFERENTIATION TRANSCRIPTIONAL ACTIVATOR
 
Molecule 2 - DNA (5'-D(P*AP*GP*GP*CP*CP*GP*GP*CP*GP*TP*GP*A)-3')
    Chains: C, D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4QGU)

(-) Sites  (0, 0)

(no "Site" information available for 4QGU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QGU)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly B:255 -Lys B:256

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QGU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QGU)

(-) Exons   (0, 0)

(no "Exon" information available for 4QGU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...eeeeeeee...eeee.....eeeeeeeeee....eeeeee.hhhhhhhhh...eeeee.eeee..eeee....eeee.........hhhhhhhhhh..hhhhhh......eeeeeeeeeeeee....eeeeeee..eeeeeeehhhhh........eeeeeeeeeeee..eeeee.....eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qgu A 199 VLQKRPVIVKVLSTTKPFEYETPEMEKKIMFHATVATQTQFFHVKVLNTSLKEKFNGKKIIIISDYLEYDSLLEVNEESTVSEAGPNQTFEVPNKIINRAKETLKIDILHKQASGNIVYGVFMLHKKTVNQKTTIYEIQDDRGKMDVVGTGQCHNIPCEEGDKLQLFCFRLRKKNQMSKLISEMHSFIQIK 389
                                   208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388 


Chain B from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee...eeee.....eeeeeeeeee....eeeeee.hhhhhhhhh...eeeee..eee..eeee....eeee........hhhhhhhhhh..hhhhhh......eeeeeeeeeeeee....eeeeeee..eeeeeeehhhhh........eeeeeeeeeee....eeee.....eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qgu B 198 NVLQKRPVIVKVLSTTKPFEYETPEMEKKIMFHATVATQTQFFHVKVLNTSLKEKFNGKKIIIISDYLEYDSLLEVNEESTVSEAGPQTFEVPNKIINRAKETLKIDILHKQASGNIVYGVFMLHKKTVNQKTTIYEIQDDRGKMDVVGTGQCHNIPCEEGDKLQLFCFRLRKKNQMSKLISEMHSFIQIK 389
                                   207       217       227       237       247       257       267       277      |288       298       308       318       328       338       348       358       368       378       388 
                                                                                                                284|                                                                                                       
                                                                                                                 286                                                                                                       


Chain C from PDB  Type:DNA  Length:12
                                            
                 4qgu C   1 AGGCCGGCGTGA  12
                                    10  


Chain D from PDB  Type:DNA  Length:10
                                          
                 4qgu D   1 GCCGGCGTGA  10
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QGU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QGU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QGU)

(-) Gene Ontology  (45, 45)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 4qgu)
 
  Cis Peptide Bonds
    Gly B:255 - Lys B:256   [ RasMol ]  
 

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  4qgu
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  IF16_HUMAN | Q16666
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IF16_HUMAN | Q16666: 2oq0 3b6y 3rln 3rlo 3rnu

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4QGU)