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(-) Description

Title :  ENSEMBLE REFINEMENT OF AN EPOXIDE HYDROLASE FROM STREPTOMYCES CARZINOSTATICUS SUBSP. NEOCARZINOSTATICUS.
 
Authors :  F. Wang, K. Tan, L. Bigelow, S. Clancy, G. Babnigg, C. A. Bingman, R. Yenn J. Lohman, M. Ma, B. Shen, A. Joachimiak, G. N. Phillips Jr. , Midwest For Structural Genomics (Mcsg), Enzyme Discovery For Natural Biosynthesis (Natpro)
Date :  02 May 14  (Deposition) - 21 May 14  (Release) - 21 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.56
Chains :  Asym. Unit :  A  (20x)
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Epoxide Hydrolase, Psi-Biology, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Wang, K. Tan, L. Bigelow, S. Clancy, G. Babnigg, C. A. Bingman, R. Yennamalli, J. Lohman, M. Ma, B. Shen, A. Joachimiak, G. N. Phillips Jr.
Ensemble Refinement Of An Epoxide Hydrolase From Streptomyces Carzinostaticus Subsp. Neocarzinostaticus.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - EPOXIDE HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: STREPTOMYCES CARZINOSTATICUS SUBSP. NEOCARZINOSTATICUS
    Organism Taxid: 167636

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit (20x): A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric Unit (2, 16)
No.NameCountTypeFull Name
1EDO12Ligand/Ion1,2-ETHANEDIOL
2SO44Ligand/IonSULFATE ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1EDO12Ligand/Ion1,2-ETHANEDIOL
2SO44Ligand/IonSULFATE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:213 , SER A:214 , ASP A:215 , LYS A:218BINDING SITE FOR RESIDUE SO4 A 401
02AC2SOFTWARESER A:-2 , ILE A:72 , ASP A:73 , LYS A:158BINDING SITE FOR RESIDUE SO4 A 402
03AC3SOFTWAREPRO A:9 , HOH A:682BINDING SITE FOR RESIDUE SO4 A 403
04AC4SOFTWAREARG A:61 , GLN A:64 , TYR A:65 , HOH A:723BINDING SITE FOR RESIDUE SO4 A 404
05AC5SOFTWAREGLN A:200 , THR A:201 , ASN A:202 , LEU A:342 , ALA A:343 , ASP A:346 , PHE A:347 , EDO A:408BINDING SITE FOR RESIDUE EDO A 405
06AC6SOFTWAREASP A:174 , PHE A:227 , MET A:235 , TRP A:267 , LEU A:335 , HOH A:621 , HOH A:669BINDING SITE FOR RESIDUE EDO A 406
07AC7SOFTWAREPHE A:178 , PHE A:309 , SER A:319 , EDO A:408 , HOH A:574BINDING SITE FOR RESIDUE EDO A 407
08AC8SOFTWARELEU A:181 , LEU A:199 , GLN A:200 , SER A:319 , EDO A:405 , EDO A:407 , EDO A:410BINDING SITE FOR RESIDUE EDO A 408
09AC9SOFTWAREPRO A:85 , ASP A:114 , ARG A:116 , ALA A:117 , ALA A:185 , HOH A:720BINDING SITE FOR RESIDUE EDO A 409
10BC1SOFTWAREPHE A:178 , LEU A:181 , LEU A:199 , GLN A:200 , EDO A:408 , HOH A:632BINDING SITE FOR RESIDUE EDO A 410
11BC2SOFTWAREASP A:174 , ILE A:175 , PHE A:178 , HOH A:621 , HOH A:669 , HOH A:698BINDING SITE FOR RESIDUE EDO A 411
12BC3SOFTWAREILE A:13 , LEU A:16 , LYS A:17 , TRP A:49 , PHE A:292BINDING SITE FOR RESIDUE EDO A 412
13BC4SOFTWAREARG A:61 , LEU A:282BINDING SITE FOR RESIDUE EDO A 413
14BC5SOFTWAREPRO A:134 , PHE A:136 , TRP A:147 , ALA A:302 , GLU A:305 , LEU A:306 , HOH A:515 , HOH A:715BINDING SITE FOR RESIDUE EDO A 414
15BC6SOFTWAREPRO A:308 , THR A:313 , HOH A:637BINDING SITE FOR RESIDUE EDO A 415
16BC7SOFTWAREGLY A:164 , ILE A:316 , HOH A:704 , HOH A:712BINDING SITE FOR RESIDUE EDO A 416

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QA9)

(-) Cis Peptide Bonds  (1, 20)

Asymmetric Unit
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Trp A:98 -Pro A:99

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QA9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QA9)

(-) Exons   (0, 0)

(no "Exon" information available for 4QA9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee....hhhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.hhhhhhhhhhh..eeeeee..eeeeeeee.......eeeeee.....hhhhhhhhhhhhhh......hhhh.eeeeee....hhhhh.......hhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeeee.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............eeeee........hhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qa9 A  -2 SNAMRPFQVQIPQADIDDLKRRLSETRWPELVDVGWSRGAPLSYIKELAEYWRDGFDWRAAERRINQYPQFTTEIDGATIHFLHVRSPEPDATPMVITHGWPGTPVEFLDIIGPLTDPRAHGGDPADAFHLVIPSLPGFGLSGPLKSAGWELGRIAMAWSKLMASLGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQTNLSGEPGELETLSDADKARLAVSERFLDDLSGPMKMQSTRPHTIGYMLNDSPVAQLAYLLEMFKHWAQTENVPEDAVDRDLMLTHISLFWFTATGGSAAQAHYELKPFLPITSLIGRSPTLDVPMGVAVYPGALFQPVRSLAERDFKQIVHWAELDRGGHFSAMEEPDLFVDDLRTFNRTLKKL 385
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QA9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QA9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QA9)

(-) Gene Ontology  (3, 3)

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  4qa9
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q84HB8_STRCZ | Q84HB8: 4i19

(-) Related Entries Specified in the PDB File

4i19 RELATED ID: MCSG-APC109144 RELATED DB: TARGETTRACK RELATED ID: NATPRO-GO.119835 RELATED DB: TARGETTRACK