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(-) Description

Title :  LPOB C-TERMINAL DOMAIN FROM ESCHERICHIA COLI
 
Authors :  D. T. King, N. C. J. Strynadka
Date :  23 Apr 14  (Deposition) - 14 May 14  (Release) - 23 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Mixed Alpha-Beta, Lipoprotein, Activator Of Pbp1B, Pbp1B, Lipidation, Outer-Membrane, , Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. T. King, E. Lameignere, N. C. Strynadka
Structural Insights Into The Lipoprotein Outer Membrane Regulator Of Penicillin-Binding Protein 1B.
J. Biol. Chem. V. 289 19245 2014
PubMed-ID: 24808177  |  Reference-DOI: 10.1074/JBC.M114.565879

(-) Compounds

Molecule 1 - PENICILLIN-BINDING PROTEIN ACTIVATOR LPOB
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: LPOB C-TERMINAL DOMAIN
    Gene: LPOB, UTI89_C1233
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 364106
    Strain: UTI89 / UPEC
    Synonym: PBP ACTIVATOR LPOB

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4Q6Z)

(-) Sites  (0, 0)

(no "Site" information available for 4Q6Z)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Q6Z)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Asn A:131 -Asn A:132
2Asn B:131 -Asn B:132
3Pro B:154 -Gln B:155

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q6Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q6Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q6Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh........eeee...eeee....hhhhhhhhhhhhhhh....ee.hhhhhhhhhhhhh........hhhhhhhhhhhh...eeeeeeeee....eeeeeeeee.....eeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q6z A  78 YDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQ 212
                                    87        97       107       117       127       137       147       157       167       177       187       197       207     


Chain B from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.......eeeee...eeee....hhhhhhhhhhhhhh....eee.hhhhhhhhhhhhh........hhhhhhhhhhhh...eeeeeeeee....eeeeeeeee....eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q6z B  78 YDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQ 212
                                    87        97       107       117       127       137       147       157       167       177       187       197       207
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q6Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q6Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q6Z)

(-) Gene Ontology  (7, 7)

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  Cis Peptide Bonds
    Asn A:131 - Asn A:132   [ RasMol ]  
    Asn B:131 - Asn B:132   [ RasMol ]  
    Pro B:154 - Gln B:155   [ RasMol ]  
 
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(-) Related Entries Specified in the PDB File

4q6l 4q6v