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(-) Description

Title :  PYLD COCRYSTALLIZED WITH L-LYSINE-NE-D-LYSINE AND NAD+
 
Authors :  F. Quitterer, P. Beck, A. Bacher, M. Groll
Date :  11 Apr 14  (Deposition) - 23 Apr 14  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A (1x),B (1x)
Biol. Unit 6:  C (1x),D (1x)
Keywords :  Rossmann Fold, Dehydrogenase, Pyrrolysine, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Quitterer, P. Beck, A. Bacher, M. Groll
The Formation Of Pyrroline And Tetrahydropyridine Rings In Amino Acids Catalyzed By Pyrrolysine Synthase (Pyld).
Angew. Chem. Int. Ed. Engl. V. 53 8150 2014
PubMed-ID: 24916332  |  Reference-DOI: 10.1002/ANIE.201402595

(-) Compounds

Molecule 1 - PYLD, PYRROLYSINE SYNTHASE
    Chains: A, B, C, D
    EC Number: 1.4.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: FULL LENGTH
    Gene: MBAR_A0835
    Mutation: YES
    Organism Scientific: METHANOSARCINA BARKERI
    Organism Taxid: 269797
    Strain: FUSARO

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D
Biological Unit 5 (1x): A (1x)B (1x)  
Biological Unit 6 (1x):   C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 40)

Asymmetric Unit (7, 40)
No.NameCountTypeFull Name
12YF4Ligand/IonN~6~-[(2R)-2,3,4,5-TETRAHYDROPYRIDIN-2-YLCARBONYL]-L-LYSINE
2EDO6Ligand/Ion1,2-ETHANEDIOL
3GOL15Ligand/IonGLYCEROL
4MG4Ligand/IonMAGNESIUM ION
5NA4Ligand/IonSODIUM ION
6NAI4Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (4, 11)
No.NameCountTypeFull Name
12YF1Ligand/IonN~6~-[(2R)-2,3,4,5-TETRAHYDROPYRIDIN-2-YLCARBONYL]-L-LYSINE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3GOL8Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5NA-1Ligand/IonSODIUM ION
6NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (5, 14)
No.NameCountTypeFull Name
12YF1Ligand/IonN~6~-[(2R)-2,3,4,5-TETRAHYDROPYRIDIN-2-YLCARBONYL]-L-LYSINE
2EDO3Ligand/Ion1,2-ETHANEDIOL
3GOL6Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5NA-1Ligand/IonSODIUM ION
6NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 3 (3, 4)
No.NameCountTypeFull Name
12YF1Ligand/IonN~6~-[(2R)-2,3,4,5-TETRAHYDROPYRIDIN-2-YLCARBONYL]-L-LYSINE
2EDO2Ligand/Ion1,2-ETHANEDIOL
3GOL-1Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5NA-1Ligand/IonSODIUM ION
6NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 4 (3, 3)
No.NameCountTypeFull Name
12YF1Ligand/IonN~6~-[(2R)-2,3,4,5-TETRAHYDROPYRIDIN-2-YLCARBONYL]-L-LYSINE
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3GOL1Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5NA-1Ligand/IonSODIUM ION
6NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 5 (4, 11)
No.NameCountTypeFull Name
12YF1Ligand/IonN~6~-[(2R)-2,3,4,5-TETRAHYDROPYRIDIN-2-YLCARBONYL]-L-LYSINE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3GOL8Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5NA-1Ligand/IonSODIUM ION
6NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 6 (3, 4)
No.NameCountTypeFull Name
12YF1Ligand/IonN~6~-[(2R)-2,3,4,5-TETRAHYDROPYRIDIN-2-YLCARBONYL]-L-LYSINE
2EDO2Ligand/Ion1,2-ETHANEDIOL
3GOL-1Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5NA-1Ligand/IonSODIUM ION
6NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (40, 40)

Asymmetric Unit (40, 40)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:2 , ASN A:121 , GLY A:150 , LYS A:151 , VAL A:152 , ASP A:171 , ALA A:172 , ALA A:203 , THR A:204 , PRO A:205 , CYS A:206 , THR A:209 , PRO A:224 , ILE A:226 , GLU A:245 , PRO A:246 , LEU A:247 , MG A:903 , 2YF A:904 , HOH A:1002 , HOH A:1004 , HOH A:1040 , HOH A:1101 , HOH A:1120BINDING SITE FOR RESIDUE NAI A 901
02AC2SOFTWAREGLU A:202 , THR A:204 , CYS A:206 , PRO A:227 , HOH A:1061BINDING SITE FOR RESIDUE NA A 902
03AC3SOFTWARETYR A:129 , GLU A:245 , LEU A:247 , ILE A:249 , GLY A:250 , NAI A:901BINDING SITE FOR RESIDUE MG A 903
04AC4SOFTWARELEU A:3 , LEU A:4 , VAL A:53 , GLY A:58 , ILE A:59 , ILE A:60 , PHE A:63 , ALA A:103 , ASP A:104 , ASN A:121 , PRO A:246 , NAI A:901 , HOH A:1010 , HOH A:1024 , HOH A:1031 , HOH A:1051 , HOH A:1101BINDING SITE FOR RESIDUE 2YF A 904
05AC5SOFTWARESER A:134 , TYR A:136 , ALA A:139 , SER A:141BINDING SITE FOR RESIDUE EDO A 905
06AC6SOFTWARESER A:45 , GLN A:72 , GLY A:75 , PHE A:76 , ASP A:164 , HOH A:1052BINDING SITE FOR RESIDUE GOL A 906
07AC7SOFTWARETHR A:5 , ASP A:7BINDING SITE FOR RESIDUE GOL A 907
08AC8SOFTWARELYS A:18 , ALA A:19 , ALA A:22 , LEU A:242 , ALA A:244 , HOH A:1111 , HOH A:1116BINDING SITE FOR RESIDUE GOL A 908
09AC9SOFTWARELEU A:38 , TYR A:39 , HOH A:1062 , HOH A:1112 , HOH A:1118 , ARG B:135BINDING SITE FOR RESIDUE GOL A 909
10BC1SOFTWAREPHE A:165 , ARG A:166 , VAL A:167 , GLY A:185 , ILE A:187BINDING SITE FOR RESIDUE GOL A 910
11BC2SOFTWAREPHE A:154 , HOH A:1044BINDING SITE FOR RESIDUE GOL A 911
12BC3SOFTWAREGLU A:131 , SER A:134 , LYS A:163 , PHE A:165 , HOH A:1089 , HOH A:1128BINDING SITE FOR RESIDUE GOL A 912
13BC4SOFTWARESER A:21 , HOH A:1077 , LYS B:47 , PHE B:79 , EDO B:906BINDING SITE FOR RESIDUE GOL A 913
14BC5SOFTWAREALA B:2 , ASN B:121 , THR B:125 , GLY B:150 , LYS B:151 , VAL B:152 , TYR B:170 , ASP B:171 , ALA B:172 , ASP B:173 , ALA B:203 , THR B:204 , PRO B:205 , THR B:209 , PRO B:224 , ILE B:226 , GLU B:245 , PRO B:246 , LEU B:247 , MG B:903 , 2YF B:904 , HOH B:1002 , HOH B:1050 , HOH B:1060 , HOH B:1113 , HOH B:1119 , HOH B:1129 , HOH B:1130BINDING SITE FOR RESIDUE NAI B 901
15BC6SOFTWAREGLU B:202 , THR B:204 , CYS B:206 , PRO B:227 , HOH B:1009BINDING SITE FOR RESIDUE NA B 902
16BC7SOFTWARETYR B:129 , GLU B:245 , LEU B:247 , ILE B:249 , GLY B:250 , NAI B:901BINDING SITE FOR RESIDUE MG B 903
17BC8SOFTWARELEU B:3 , LEU B:4 , VAL B:53 , GLY B:58 , ILE B:59 , ILE B:60 , PHE B:63 , ALA B:103 , ASN B:121 , PRO B:246 , NAI B:901 , HOH B:1006 , HOH B:1010 , HOH B:1034 , HOH B:1052 , HOH B:1113BINDING SITE FOR RESIDUE 2YF B 904
18BC9SOFTWARELYS B:32 , LYS B:36 , SER B:43 , HOH B:1061BINDING SITE FOR RESIDUE EDO B 905
19CC1SOFTWAREGLN A:17 , GOL A:913 , HOH A:1078 , ASP B:82 , GLU B:91 , ASN B:95BINDING SITE FOR RESIDUE EDO B 906
20CC2SOFTWAREALA A:192 , LYS B:196 , GLU B:217BINDING SITE FOR RESIDUE EDO B 907
21CC3SOFTWARETHR B:41 , PHE B:42 , LEU B:259 , HOH B:1029 , HOH B:1036BINDING SITE FOR RESIDUE GOL B 908
22CC4SOFTWAREGLU A:158 , VAL A:161 , GLN A:162 , ASN A:183 , LEU A:184 , LYS B:36 , THR B:41 , PHE B:42BINDING SITE FOR RESIDUE GOL B 909
23CC5SOFTWARELEU B:9 , ILE B:10 , ASN B:11 , ILE B:12 , ASN B:62 , ALA B:65 , SER B:66 , PEG B:916 , HOH B:1057BINDING SITE FOR RESIDUE GOL B 910
24CC6SOFTWARELYS A:32 , TYR A:73 , HOH A:1012 , GLN B:72 , ASP B:77 , SER B:78 , HOH B:1117 , HOH B:1125BINDING SITE FOR RESIDUE GOL B 911
25CC7SOFTWARELEU B:38BINDING SITE FOR RESIDUE GOL B 912
26CC8SOFTWAREALA B:19 , ARG B:235 , LEU B:242 , ALA B:244BINDING SITE FOR RESIDUE GOL B 913
27CC9SOFTWAREALA A:37 , ARG A:135 , LYS A:163 , GLN B:24 , GLU B:25 , GLY B:28 , HOH B:1088BINDING SITE FOR RESIDUE PEG B 914
28DC1SOFTWAREVAL A:53 , ASP A:85 , MET A:102 , ASP B:85 , MET B:102BINDING SITE FOR RESIDUE PEG B 915
29DC2SOFTWARELEU A:9 , ASN A:11 , ILE A:12 , ASN A:62 , ALA A:65 , SER A:66 , ALA A:69 , HOH A:1086 , ASN B:13 , GOL B:910 , HOH B:1019 , HOH B:1056 , HOH B:1059BINDING SITE FOR RESIDUE PEG B 916
30DC3SOFTWAREALA B:207 , ALA C:2 , ASN C:121 , THR C:125 , GLY C:150 , LYS C:151 , VAL C:152 , ASP C:171 , ALA C:172 , ASP C:173 , LEU C:176 , ALA C:203 , THR C:204 , PRO C:205 , PRO C:224 , ILE C:226 , GLU C:245 , PRO C:246 , LEU C:247 , MG C:903 , 2YF C:904 , EDO C:905 , HOH C:1008 , HOH C:1018BINDING SITE FOR RESIDUE NAI C 901
31DC4SOFTWAREGLU C:202 , THR C:204 , CYS C:206 , PRO C:227 , ALA C:229 , HOH C:1017BINDING SITE FOR RESIDUE NA C 902
32DC5SOFTWARETYR C:129 , GLU C:245 , LEU C:247 , ILE C:249 , GLY C:250 , NAI C:901BINDING SITE FOR RESIDUE MG C 903
33DC6SOFTWARELEU C:3 , LEU C:4 , PRO C:52 , VAL C:53 , GLY C:58 , ILE C:59 , ILE C:60 , PHE C:63 , ALA C:103 , LEU C:247 , NAI C:901 , EDO C:905 , HOH C:1007 , HOH C:1009 , HOH C:1012BINDING SITE FOR RESIDUE 2YF C 904
34DC7SOFTWAREASP C:105 , GLN C:122 , NAI C:901 , 2YF C:904BINDING SITE FOR RESIDUE EDO C 905
35DC8SOFTWARELYS D:36BINDING SITE FOR RESIDUE EDO C 906
36DC9SOFTWAREALA D:2 , ASN D:121 , THR D:125 , VAL D:147 , GLY D:150 , LYS D:151 , VAL D:152 , TYR D:170 , ASP D:171 , ALA D:172 , LEU D:176 , ALA D:203 , THR D:204 , PRO D:205 , CYS D:206 , THR D:209 , PRO D:224 , ILE D:226 , GLU D:245 , PRO D:246 , LEU D:247 , MG D:903 , 2YF D:904 , HOH D:1004 , HOH D:1016 , HOH D:1017 , HOH D:1025BINDING SITE FOR RESIDUE NAI D 901
37EC1SOFTWAREGLU D:202 , THR D:204 , CYS D:206 , PRO D:227 , ALA D:229 , HOH D:1008BINDING SITE FOR RESIDUE NA D 902
38EC2SOFTWARETYR D:129 , GLU D:245 , LEU D:247 , ILE D:249 , GLY D:250 , NAI D:901BINDING SITE FOR RESIDUE MG D 903
39EC3SOFTWARELEU D:3 , LEU D:4 , PRO D:52 , VAL D:53 , GLY D:58 , ILE D:59 , ILE D:60 , PHE D:63 , ALA D:103 , ASN D:121 , NAI D:901 , HOH D:1001 , HOH D:1005 , HOH D:1020 , HOH D:1022BINDING SITE FOR RESIDUE 2YF D 904
40EC4SOFTWAREASP D:85 , TYR D:89 , MET D:102BINDING SITE FOR RESIDUE GOL D 905

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1B:206 -C:206

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ile A:226 -Pro A:227
2Ile B:226 -Pro B:227
3Ile C:226 -Pro C:227
4Ile D:226 -Pro D:227

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q3B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q3B)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q3B)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......eeee...........hhhhhhhhhhhhh..eeee...hhhhhhhhhhhh...eeeee....eeeee.....eeehhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhh.ee..........eeee........hhhhh....eee........hhhhhhhh..eee...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q3b A   0 SMALLTPDDLININMQLQKADSAVQEVTGLDIKGICKALYGTFSSSEKVGIVPVTSGNGIIGNFSASLHAITQYFGFDSFVTDMPDVSGYYEAVQNGAEIILMADDRTFLAHNLKNGKMANNQPCTGIIYAEIASRYLKADSKDVLVVGLGKVGFPGAEHLVQKDFRVYGYDADETLLERATSNLGIIPFDPANPKKFSIIFEATPCANTIPEAVLSENCVLSTPGIPCAISEELRDKYEVQLIAEPLGIGTASMLYSVL 259
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259


Chain B from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......eeee...........hhhhhhhhhhhhh..eeee...hhhhhhhhhhhh...eeeee....eeeee.....eeehhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhh.ee........eeeeee........hhh.eeeeeeee........hhhhhhhh..eee...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q3b B   0 SMALLTPDDLININMQLQKADSAVQEVTGLDIKGICKALYGTFSSSEKVGIVPVTSGNGIIGNFSASLHAITQYFGFDSFVTDMPDVSGYYEAVQNGAEIILMADDRTFLAHNLKNGKMANNQPCTGIIYAEIASRYLKADSKDVLVVGLGKVGFPGAEHLVQKDFRVYGYDADETLLERATSNLGIIPFDPANPKKFSIIFEATPCANTIPEAVLSENCVLSTPGIPCAISEELRDKYEVQLIAEPLGIGTASMLYSVL 259
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259


Chain C from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......eeee...........hhhhhhhhhhhhh..eeee...hhhhhhhhhhhh...eeeee....eeeee.....eeehhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhh.ee........eeeeee........hhh.eeeeeeee........hhhhhhhh..eee...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q3b C   0 SMALLTPDDLININMQLQKADSAVQEVTGLDIKGICKALYGTFSSSEKVGIVPVTSGNGIIGNFSASLHAITQYFGFDSFVTDMPDVSGYYEAVQNGAEIILMADDRTFLAHNLKNGKMANNQPCTGIIYAEIASRYLKADSKDVLVVGLGKVGFPGAEHLVQKDFRVYGYDADETLLERATSNLGIIPFDPANPKKFSIIFEATPCANTIPEAVLSENCVLSTPGIPCAISEELRDKYEVQLIAEPLGIGTASMLYSVL 259
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259


Chain D from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......eeee...........hhhhhhhhhhhhh..eeee...hhhhhhhhhhhh...eeeee....eeeee.....eeehhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhh.ee........eeeeee........hhh.eeeeeeee........hhhhhhhh..eee...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q3b D   0 SMALLTPDDLININMQLQKADSAVQEVTGLDIKGICKALYGTFSSSEKVGIVPVTSGNGIIGNFSASLHAITQYFGFDSFVTDMPDVSGYYEAVQNGAEIILMADDRTFLAHNLKNGKMANNQPCTGIIYAEIASRYLKADSKDVLVVGLGKVGFPGAEHLVQKDFRVYGYDADETLLERATSNLGIIPFDPANPKKFSIIFEATPCANTIPEAVLSENCVLSTPGIPCAISEELRDKYEVQLIAEPLGIGTASMLYSVL 259
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q3B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q3B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q3B)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        Q46E80_METBF | Q46E80: 4j43 4j49 4j4b 4j4h 4jk3 4q39 4q3a 4q3c 4q3d 4q3e

(-) Related Entries Specified in the PDB File

3t7v PYLB IN COMPLEX WITH 3R-METHYL-D-ORNITHINE
4ffp PYLC IN COMPLEX WITH L-LYSINE-NE-D-ORNITHINE
4q39 PYLD IN COMPLEX WITH PYRROLYSINE
4q3a
4q3c
4q3d
4q3e