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(-) Description

Title :  PYLD COCRYSTALLIZED WITH L-LYSINE-NE-3S-METHYL-L-ORNITHINE AND NAD+
 
Authors :  F. Quitterer, P. Beck, A. Bacher, M. Groll
Date :  11 Apr 14  (Deposition) - 23 Apr 14  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A (1x),B (1x)
Biol. Unit 6:  C (1x),D (1x)
Keywords :  Rossmann Fold, Dehydrogenase, Pyrrolysine, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Quitterer, P. Beck, A. Bacher, M. Groll
The Formation Of Pyrroline And Tetrahydropyridine Rings In Amino Acids Catalyzed By Pyrrolysine Synthase (Pyld).
Angew. Chem. Int. Ed. Engl. V. 53 8150 2014
PubMed-ID: 24916332  |  Reference-DOI: 10.1002/ANIE.201402595

(-) Compounds

Molecule 1 - PYLD, PYRROLYSINE SYNTHASE
    Chains: A, B, C, D
    EC Number: 1.4.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MBAR_A0835
    Organism Scientific: METHANOSARCINA BARKERI
    Organism Taxid: 269797
    Strain: FUSARO

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D
Biological Unit 5 (1x): A (1x)B (1x)  
Biological Unit 6 (1x):   C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 48)

Asymmetric Unit (8, 48)
No.NameCountTypeFull Name
12YC4Ligand/IonN~6~-{[(2S,3S)-3-METHYL-3,4-DIHYDRO-2H-PYRROL-2-YL]CARBONYL}-L-LYSINE
2EDO13Ligand/Ion1,2-ETHANEDIOL
3GOL14Ligand/IonGLYCEROL
4MG4Ligand/IonMAGNESIUM ION
5NA4Ligand/IonSODIUM ION
6NAI4Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
8SO42Ligand/IonSULFATE ION
Biological Unit 1 (5, 13)
No.NameCountTypeFull Name
12YC1Ligand/IonN~6~-{[(2S,3S)-3-METHYL-3,4-DIHYDRO-2H-PYRROL-2-YL]CARBONYL}-L-LYSINE
2EDO3Ligand/Ion1,2-ETHANEDIOL
3GOL7Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5NA-1Ligand/IonSODIUM ION
6NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
8SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (6, 19)
No.NameCountTypeFull Name
12YC1Ligand/IonN~6~-{[(2S,3S)-3-METHYL-3,4-DIHYDRO-2H-PYRROL-2-YL]CARBONYL}-L-LYSINE
2EDO7Ligand/Ion1,2-ETHANEDIOL
3GOL6Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5NA-1Ligand/IonSODIUM ION
6NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
8SO42Ligand/IonSULFATE ION
Biological Unit 3 (4, 6)
No.NameCountTypeFull Name
12YC1Ligand/IonN~6~-{[(2S,3S)-3-METHYL-3,4-DIHYDRO-2H-PYRROL-2-YL]CARBONYL}-L-LYSINE
2EDO3Ligand/Ion1,2-ETHANEDIOL
3GOL1Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5NA-1Ligand/IonSODIUM ION
6NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
8SO4-1Ligand/IonSULFATE ION
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
12YC1Ligand/IonN~6~-{[(2S,3S)-3-METHYL-3,4-DIHYDRO-2H-PYRROL-2-YL]CARBONYL}-L-LYSINE
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3GOL-1Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5NA-1Ligand/IonSODIUM ION
6NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
8SO4-1Ligand/IonSULFATE ION
Biological Unit 5 (6, 19)
No.NameCountTypeFull Name
12YC1Ligand/IonN~6~-{[(2S,3S)-3-METHYL-3,4-DIHYDRO-2H-PYRROL-2-YL]CARBONYL}-L-LYSINE
2EDO7Ligand/Ion1,2-ETHANEDIOL
3GOL6Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5NA-1Ligand/IonSODIUM ION
6NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
8SO42Ligand/IonSULFATE ION
Biological Unit 6 (4, 6)
No.NameCountTypeFull Name
12YC1Ligand/IonN~6~-{[(2S,3S)-3-METHYL-3,4-DIHYDRO-2H-PYRROL-2-YL]CARBONYL}-L-LYSINE
2EDO3Ligand/Ion1,2-ETHANEDIOL
3GOL1Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
5NA-1Ligand/IonSODIUM ION
6NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
8SO4-1Ligand/IonSULFATE ION

(-) Sites  (48, 48)

Asymmetric Unit (48, 48)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:2 , ASN A:121 , THR A:125 , GLY A:150 , LYS A:151 , VAL A:152 , TYR A:170 , ASP A:171 , ALA A:172 , ALA A:203 , THR A:204 , PRO A:205 , CYS A:206 , THR A:209 , PRO A:224 , ILE A:226 , GLU A:245 , PRO A:246 , LEU A:247 , MG A:903 , HOH A:1001 , HOH A:1002 , HOH A:1040 , HOH A:1042 , HOH A:1045 , HOH A:1101 , ALA D:207BINDING SITE FOR RESIDUE NAI A 901
02AC2SOFTWAREGLU A:202 , THR A:204 , CYS A:206 , PRO A:227BINDING SITE FOR RESIDUE NA A 902
03AC3SOFTWARETYR A:129 , GLU A:245 , LEU A:247 , ILE A:249 , GLY A:250 , NAI A:901BINDING SITE FOR RESIDUE MG A 903
04AC4SOFTWARELEU A:3 , LEU A:4 , VAL A:53 , GLY A:58 , ILE A:59 , ILE A:60 , PHE A:63 , ALA A:103 , ASN A:121 , PRO A:246 , HOH A:1004 , HOH A:1006 , HOH A:1017 , HOH A:1044 , HOH A:1065 , HOH A:1080BINDING SITE FOR RESIDUE 2YC A 904
05AC5SOFTWAREGLU A:158 , GLN A:162 , LYS B:36 , GLY B:40 , THR B:41 , PHE B:42 , HOH B:1029BINDING SITE FOR RESIDUE GOL A 905
06AC6SOFTWAREASP A:85 , ASP B:85 , MET B:102BINDING SITE FOR RESIDUE GOL A 906
07AC7SOFTWAREALA A:37 , GLU A:131 , ARG A:135 , HIS A:159 , EDO A:915BINDING SITE FOR RESIDUE GOL A 907
08AC8SOFTWAREALA A:19 , ARG A:235 , LEU A:242 , ALA A:244BINDING SITE FOR RESIDUE GOL A 908
09AC9SOFTWARELEU A:9 , ILE A:10 , ASN A:11 , ILE A:12 , ALA A:65 , HOH A:1126BINDING SITE FOR RESIDUE GOL A 909
10BC1SOFTWARESER A:45 , GLN A:72 , GLY A:75 , LYS B:32 , GLN B:72 , TYR B:73 , GLY B:75 , SO4 B:911BINDING SITE FOR RESIDUE GOL A 910
11BC2SOFTWAREGLN A:72 , ASP A:77 , ASP B:20 , LYS B:32 , TYR B:73 , HOH B:1031BINDING SITE FOR RESIDUE GOL A 911
12BC3SOFTWARELYS A:117 , MET A:118 , ALA A:119 , SER A:257BINDING SITE FOR RESIDUE PEG A 912
13BC4SOFTWAREPHE A:165 , VAL A:167 , GLY A:185BINDING SITE FOR RESIDUE EDO A 913
14BC5SOFTWARESER A:134 , ARG A:135 , LYS A:163 , PHE A:165BINDING SITE FOR RESIDUE EDO A 914
15BC6SOFTWARELEU A:38 , ILE A:127 , GOL A:907 , HOH A:1114BINDING SITE FOR RESIDUE EDO A 915
16BC7SOFTWAREALA B:2 , ASN B:121 , GLN B:122 , THR B:125 , GLY B:150 , LYS B:151 , VAL B:152 , ASP B:171 , ALA B:172 , ASP B:173 , ALA B:203 , THR B:204 , PRO B:205 , CYS B:206 , THR B:209 , PRO B:224 , ILE B:226 , GLU B:245 , PRO B:246 , LEU B:247 , MG B:903 , 2YC B:904 , HOH B:1001 , HOH B:1005 , HOH B:1032 , HOH B:1062 , HOH B:1108 , ALA C:207 , HOH C:1015BINDING SITE FOR RESIDUE NAI B 901
17BC8SOFTWAREGLU B:202 , THR B:204 , CYS B:206 , GLY B:225 , PRO B:227 , HOH B:1058BINDING SITE FOR RESIDUE NA B 902
18BC9SOFTWARETYR B:129 , GLU B:245 , LEU B:247 , ILE B:249 , GLY B:250 , NAI B:901BINDING SITE FOR RESIDUE MG B 903
19CC1SOFTWARELEU B:3 , LEU B:4 , VAL B:53 , GLY B:58 , ILE B:59 , ILE B:60 , PHE B:63 , ALA B:103 , ASP B:104 , ASN B:121 , PRO B:246 , NAI B:901 , HOH B:1002 , HOH B:1006 , HOH B:1036 , HOH B:1039 , HOH B:1041 , HOH B:1042BINDING SITE FOR RESIDUE 2YC B 904
20CC2SOFTWARELYS A:142 , LYS A:163 , GLN B:24 , GLY B:28 , LEU B:29BINDING SITE FOR RESIDUE GOL B 905
21CC3SOFTWARETHR B:41 , PHE B:42 , LEU B:259 , HOH B:1019 , HOH B:1034BINDING SITE FOR RESIDUE GOL B 906
22CC4SOFTWAREGLY B:61 , ASN B:62 , PHE B:63 , SER B:64 , ALA B:65 , HOH B:1055BINDING SITE FOR RESIDUE GOL B 907
23CC5SOFTWARELYS A:32 , TYR A:73 , HOH A:1035 , HOH A:1124 , HOH A:1125 , GLN B:72 , ASP B:77 , SO4 B:911BINDING SITE FOR RESIDUE GOL B 908
24CC6SOFTWARELEU B:9 , ILE B:10 , ASN B:11 , ILE B:12 , ALA B:65BINDING SITE FOR RESIDUE GOL B 909
25CC7SOFTWARELYS B:18 , ALA B:19 , LEU B:242 , ALA B:244 , HOH B:1050BINDING SITE FOR RESIDUE GOL B 910
26CC8SOFTWARELYS A:32 , TYR A:73 , GLY A:75 , GOL A:910 , SER B:45 , GLN B:72 , PHE B:76 , GOL B:908BINDING SITE FOR RESIDUE SO4 B 911
27CC9SOFTWAREALA B:37 , LEU B:38 , GLU B:131 , ARG B:135 , LYS B:163 , HOH B:1094BINDING SITE FOR RESIDUE SO4 B 912
28DC1SOFTWAREMET B:118 , CYS B:124 , SER B:257 , HOH B:1053BINDING SITE FOR RESIDUE PEG B 913
29DC2SOFTWARELEU A:113 , LYS A:114 , LEU B:113 , LYS B:114BINDING SITE FOR RESIDUE PEG B 914
30DC3SOFTWAREPHE B:165 , VAL B:167 , GLY B:185BINDING SITE FOR RESIDUE EDO B 915
31DC4SOFTWAREGLN A:17 , SER A:21 , HOH A:1060 , HOH A:1087 , HOH A:1099 , LYS B:47BINDING SITE FOR RESIDUE EDO B 916
32DC5SOFTWAREPRO B:52 , ASP B:82BINDING SITE FOR RESIDUE EDO B 917
33DC6SOFTWAREVAL A:80 , GLU A:91 , ASN A:95 , GLN B:17BINDING SITE FOR RESIDUE EDO B 918
34DC7SOFTWARELEU B:149 , GLY B:150 , LEU B:176 , ARG B:179BINDING SITE FOR RESIDUE EDO B 919
35DC8SOFTWARESER B:44 , GLU B:98 , LYS B:114BINDING SITE FOR RESIDUE EDO B 920
36DC9SOFTWARELEU B:38BINDING SITE FOR RESIDUE EDO B 921
37EC1SOFTWAREALA B:207 , ALA C:2 , ASN C:121 , GLN C:122 , THR C:125 , GLY C:150 , LYS C:151 , VAL C:152 , TYR C:170 , ASP C:171 , ALA C:172 , ASP C:173 , ALA C:203 , THR C:204 , PRO C:205 , PRO C:224 , ILE C:226 , GLU C:245 , PRO C:246 , LEU C:247 , MG C:903 , 2YC C:904 , HOH C:1002 , HOH C:1003 , HOH C:1009 , HOH C:1018 , HOH C:1030BINDING SITE FOR RESIDUE NAI C 901
38EC2SOFTWAREGLU C:202 , THR C:204 , CYS C:206 , PRO C:227 , HOH C:1039BINDING SITE FOR RESIDUE NA C 902
39EC3SOFTWARETYR C:129 , GLU C:245 , LEU C:247 , ILE C:249 , GLY C:250 , NAI C:901BINDING SITE FOR RESIDUE MG C 903
40EC4SOFTWARELEU C:3 , LEU C:4 , PRO C:52 , VAL C:53 , GLY C:58 , ILE C:59 , ILE C:60 , ALA C:103 , ASN C:121 , NAI C:901 , HOH C:1001 , HOH C:1005 , HOH C:1007 , HOH C:1044BINDING SITE FOR RESIDUE 2YC C 904
41EC5SOFTWAREASP C:85 , ASP D:85 , MET D:102BINDING SITE FOR RESIDUE GOL C 905
42EC6SOFTWAREMET C:1 , ALA C:2 , PRO C:205BINDING SITE FOR RESIDUE EDO C 906
43EC7SOFTWAREILE C:59 , ILE C:60 , GLY C:61BINDING SITE FOR RESIDUE EDO C 907
44EC8SOFTWARELEU C:242 , ILE C:243 , ALA C:244BINDING SITE FOR RESIDUE EDO C 908
45EC9SOFTWAREHOH A:1059 , ALA D:2 , ASN D:121 , GLN D:122 , THR D:125 , VAL D:147 , GLY D:150 , LYS D:151 , VAL D:152 , TYR D:170 , ASP D:171 , ALA D:172 , ALA D:203 , THR D:204 , PRO D:205 , THR D:209 , PRO D:224 , ILE D:226 , GLU D:245 , PRO D:246 , LEU D:247 , MG D:903 , HOH D:1002 , HOH D:1004 , HOH D:1011BINDING SITE FOR RESIDUE NAI D 901
46FC1SOFTWAREGLU D:202 , THR D:204 , CYS D:206 , PRO D:227 , HOH D:1007BINDING SITE FOR RESIDUE NA D 902
47FC2SOFTWARETYR D:129 , GLU D:245 , LEU D:247 , ILE D:249 , GLY D:250 , NAI D:901BINDING SITE FOR RESIDUE MG D 903
48FC3SOFTWARELEU D:3 , LEU D:4 , PRO D:52 , VAL D:53 , GLY D:58 , ILE D:59 , ILE D:60 , PHE D:63 , ALA D:103 , ASN D:121 , HOH D:1001 , HOH D:1005 , HOH D:1017BINDING SITE FOR RESIDUE 2YC D 904

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:206 -D:206
2B:206 -C:206

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ile A:226 -Pro A:227
2Ile B:226 -Pro B:227
3Ile C:226 -Pro C:227
4Ile D:226 -Pro D:227

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q3A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q3A)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q3A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......eeee...........hhhhhhhhhhhhh..eeee...hhhhhhhhhhhh...eeeee....eeeee.....eeehhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhh.ee........eeeeee........hhh.eeeeeeee........hhhhhhhh..eee...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q3a A   1 MALLTPDDLININMQLQKADSAVQEVTGLDIKGICKALYGTFSSSEKVGIVPVTSGNGIIGNFSASLHAITQYFGFDSFVTDMPDVSGYYEAVQNGAEIILMADDRTFLAHNLKNGKMANNQPCTGIIYAEIASRYLKADSKDVLVVGLGKVGFPGAEHLVQKDFRVYGYDADETLLERATSNLGIIPFDPANPKKFSIIFEATPCANTIPEAVLSENCVLSTPGIPCAISEELRDKYEVQLIAEPLGIGTASMLYSVL 259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         


Chain B from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......eeee...........hhhhhhhhhhhhh..eeee...hhhhhhhhhhhh...eeeee....eeeee.....eeehhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhh.ee..........eeee........hhhhh....eee........hhhhhhhh..eee...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q3a B   1 MALLTPDDLININMQLQKADSAVQEVTGLDIKGICKALYGTFSSSEKVGIVPVTSGNGIIGNFSASLHAITQYFGFDSFVTDMPDVSGYYEAVQNGAEIILMADDRTFLAHNLKNGKMANNQPCTGIIYAEIASRYLKADSKDVLVVGLGKVGFPGAEHLVQKDFRVYGYDADETLLERATSNLGIIPFDPANPKKFSIIFEATPCANTIPEAVLSENCVLSTPGIPCAISEELRDKYEVQLIAEPLGIGTASMLYSVL 259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         


Chain C from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......eeee...........hhhhhhhhhhhhh..eeee...hhhhhhhhhhhh...eeeee....eeeee.....eeehhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhh.ee..........eeee........hhhhh....eee........hhhhhhhh..eee...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q3a C   0 SMALLTPDDLININMQLQKADSAVQEVTGLDIKGICKALYGTFSSSEKVGIVPVTSGNGIIGNFSASLHAITQYFGFDSFVTDMPDVSGYYEAVQNGAEIILMADDRTFLAHNLKNGKMANNQPCTGIIYAEIASRYLKADSKDVLVVGLGKVGFPGAEHLVQKDFRVYGYDADETLLERATSNLGIIPFDPANPKKFSIIFEATPCANTIPEAVLSENCVLSTPGIPCAISEELRDKYEVQLIAEPLGIGTASMLYSVL 259
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259


Chain D from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......eeee...........hhhhhhhhhhhhh..eeee...hhhhhhhhhhhh...eeeee....eeeee.....eeehhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhh.ee..........eeee........hhhhh....eee........hhhhhhhh..eee...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q3a D   1 MALLTPDDLININMQLQKADSAVQEVTGLDIKGICKALYGTFSSSEKVGIVPVTSGNGIIGNFSASLHAITQYFGFDSFVTDMPDVSGYYEAVQNGAEIILMADDRTFLAHNLKNGKMANNQPCTGIIYAEIASRYLKADSKDVLVVGLGKVGFPGAEHLVQKDFRVYGYDADETLLERATSNLGIIPFDPANPKKFSIIFEATPCANTIPEAVLSENCVLSTPGIPCAISEELRDKYEVQLIAEPLGIGTASMLYSVL 259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q3A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q3A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q3A)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q46E80_METBF | Q46E80: 4j43 4j49 4j4b 4j4h 4jk3 4q39 4q3b 4q3c 4q3d 4q3e

(-) Related Entries Specified in the PDB File

3t7v PYLB IN COMPLEX WITH 3R-METHYL-D-ORNITHINE
4ffp PYLC IN COMPLEX WITH L-LYSINE-NE-D-ORNITHINE
4q39 PYLD IN COMPLEX WITH PYRROLYSINE
4q3b
4q3c
4q3d
4q3e