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(-) Description

Title :  CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA FTSH PERIPLASMIC DOMAIN
 
Authors :  J. Y. An, H. Sharif, F. N. Barrera, A. Karabadzhak, G. B. Kang, K. J. Park, S. Sakkiah, K. W. Lee, S. Lee, D. M. Engelman, J. Wang, S. H. Eom
Date :  01 Apr 14  (Deposition) - 01 Apr 15  (Release) - 01 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Atp-Dependent Proteolysis, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Y. An, H. Sharif, F. N. Barrera, A. Karabadzhak, G. B. Kang, K. J. Park S. Sakkiah, K. W. Lee, S. Lee, D. M. Engelman, J. Wang, S. H. Eom
Structures Of Periplasmic And Transmembrane Domains Of Ftsh Suggest A Reverse Translocon Mechanism For Protein Extraction From Membrane
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH
    Chains: A, B, C
    EC Number: 3.4.24.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: PERIPLASMIC DOMAIN, UNP RESIDUES 34-101
    Gene: FTSH, TM_0580
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Strain: MSB8

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4Q0F)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Q0F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Q0F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q0F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q0F)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q0F)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:68
                                                                                                    
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....eeeeeee...eeeeee....eeeee..hhhhhhhhhhhhhhh..eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 4q0f A  34 SKLSYTSFVQmVEDERSVVSEVVIRDDGVLRVYTKDGRVYEVDAPWAVNDSQLIEKLVSKGIKVSGER 101
                                    43|       53        63        73        83        93        
                                     44-MSE                                                     


Chain B from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....eeeeeee...eeeeee....eeeee.hhhh.hhhhhhhhhhh..eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 4q0f B  34 SKLSYTSFVQmVEDERSVVSEVVIRDDGVLRVYTKDGRVYEVDAPWAVNDSQLIEKLVSKGIKVSGE 100
                                    43|       53        63        73        83        93       
                                     44-MSE                                                    


Chain C from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh....eeeeeee...eeeeee....eeeee.hhhhhhhhhhhhhhhh..eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 4q0f C  35 KLSYTSFVQmVEDERSVVSEVVIRDDGVLRVYTKDGRVYEVDAPWAVNDSQLIEKLVSKGIKVSGER 101
                                    44        54        64        74        84        94       
                                    44-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q0F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q0F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q0F)

(-) Gene Ontology  (15, 15)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTSH_THEMA | Q9WZ49: 2ce7 2cea 3kds 4m8a

(-) Related Entries Specified in the PDB File

4m8a THE SAME PROTEIN