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(-) Description

Title :  CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA FTSH PERIPLASMIC DOMAIN
 
Authors :  J. Y. An, H. Sharif, F. N. Barrera, A. Karabadzhak, G. B. Kang, K. J. Park, S. Sakkiah, K. W. Lee, S. Lee, D. M. Engelman, J. Wang, S. H. Eom
Date :  13 Aug 13  (Deposition) - 17 Sep 14  (Release) - 17 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Protease, Atp-Dependent Proteolysis, Open-Closed Gating, Periplasmic Innermembrane, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Y. An, H. Sharif, F. N. Barrera, A. Karabadzhak, G. B. Kang, K. J. Park S. Sakkiah, K. W. Lee, S. Lee, D. M. Engelman, J. Wang, S. H. Eom
Structural Roles Of Periplasmic And Transmembrane Domains O Ftsh In Atp-Dependent Proteolysis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH
    Chains: A, B, C
    EC Number: 3.4.24.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MODIFIED PET28A
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: PERIPLASMIC DOMAIN, UNP RESIDUES 34-101
    Gene: FTSH, TM_0580
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Strain: MSB8

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:53 , HOH A:822 , HOH A:901 , ARG B:58 , GLU B:100 , HOH B:247 , HOH B:271BINDING SITE FOR RESIDUE TRS A 700

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M8A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4M8A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M8A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M8A)

(-) Exons   (0, 0)

(no "Exon" information available for 4M8A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....eeeeee....eeeeee....eeeee.hhhh.hhhhhhhhhhh..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 4m8a A  34 SKLSYTSFVQMVEDERSVVSEVVIRDDGVLRVYTKDGRVYEVDAPWAVNDSQLIEKLVSKGIKVSGE 100
                                    43        53        63        73        83        93       


Chain B from PDB  Type:PROTEIN  Length:68
                                                                                                    
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....eeeeeee...eeeeee....eeeee.hhhhhhhhhhhhhhhh..eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 4m8a B  34 SKLSYTSFVQMVEDERSVVSEVVIRDDGVLRVYTKDGRVYEVDAPWAVNDSQLIEKLVSKGIKVSGER 101
                                    43        53        63        73        83        93        


Chain C from PDB  Type:PROTEIN  Length:68
                                                                                                    
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....eeeeeee...eeeeee....eeeee..hhhhhhhhhhhhhhh..eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 4m8a C  34 SKLSYTSFVQMVEDERSVVSEVVIRDDGVLRVYTKDGRVYEVDAPWAVNDSQLIEKLVSKGIKVSGER 101
                                    43        53        63        73        83        93
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M8A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M8A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M8A)

(-) Gene Ontology  (15, 15)

Asymmetric Unit(hide GO term definitions)

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        FTSH_THEMA | Q9WZ49: 2ce7 2cea 3kds 4q0f

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