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(-) Description

Title :  CRYSTAL STRUCTURE OF GH62 HYDROLASE IN COMPLEX WITH XYLOTRIOSE
 
Authors :  B. Nocek, A. P. Kaur, X. Xu, H. Cui, A. Savchenko
Date :  17 Mar 14  (Deposition) - 24 Sep 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.48
Chains :  Asym./Biol. Unit :  A
Keywords :  Arabinofuranosidase, Arabinofuranohydrolase, Gh62 Hydrolase, Fungal Genomics, Arabinoxylan, Lignocellulose Degradation, Xylotriose, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kaur, B. Nocek, X. Xu, M. J. Lowden, J. F. Leyva, P. J. Stogios, H. Cui, R. D. Leo, J. Powlowski, A. Tsang, A. Savchenko
Crystal Structure Of Gh62 Hydrolase In Complex With Xylotriose
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GH62 HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: SCYTALIDIUM THERMOPHILUM
    Organism Taxid: 85995

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
12WS1Ligand/IonBETA-D-XYLOPYRANOSYL-(1->4)-BETA-D-XYLOPYRANOSYL-(1->4)-BETA-D-XYLOPYRANOSE
2PO42Ligand/IonPHOSPHATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:168 , ASP A:181 , ASN A:183 , ASP A:194 , TYR A:226 , TRP A:229 , GLU A:230 , ARG A:259 , TYR A:338 , ASN A:339 , HOH A:828 , HOH A:911 , HOH A:943 , HOH A:1090 , HOH A:1202 , HOH A:1208BINDING SITE FOR RESIDUE 2WS A 601
2AC2SOFTWAREARG A:108 , GLU A:117 , ASN A:128 , HOH A:728 , HOH A:852 , HOH A:922 , HOH A:996 , HOH A:1017 , HOH A:1148 , HOH A:1190BINDING SITE FOR RESIDUE PO4 A 602
3AC3SOFTWAREASP A:178 , ARG A:236 , GLU A:241 , HOH A:989 , HOH A:1152BINDING SITE FOR RESIDUE PO4 A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PVI)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:208 -Pro A:209

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PVI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PVI)

(-) Exons   (0, 0)

(no "Exon" information available for 4PVI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee...............eeeeeeeeee..eeeeeeeeee..eeeeeeeee.hhhhhhhh..ee.hhh.......eeeeeeeehhhheeeeeee...eeeeee....hhhhh...ee......hhhhhhhh.....eeeeeee.........eeeeeee....eeeeeeee...........eeeee...hhhhhheeeeeeee........eeeeeeee.....eeeeeeee.......ee..........hhh.eee.........eeeee.........ee......eeeeee.......hhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pvi A  -7 ENLYFQGSSWKWVSTGPLVFPKNDERNIAGIKDPTAVLINGTYHVFASTAKSEGYNMVYFNFTDFAEANNAPFYYLDQAPLGYGYRAAPQVFYFEPHKLWYLVYQNGNAAYSTNPDINDPSKWTAPEVFYPNGMPKIIADNIGNGYWVDMWVVCDDEEDPNKALCHLFSSDDNGHLYRSQTTLAQFPRGMSEPEIVLQDTQNIYALWEAACIYRIKGAEGTQKYLLLVEAIGQEGHRYFRSWTSDRIDGQWIPLADTEANPWAGEANVVFEGQKWTKSISHGEVIRTLTDQTLTLDLSEPIQFLYQGVDPNAQTEYNALPWRLGLITQ 350
                                  ||32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342        
                                 -1|                                                                                                                                                                                                                                                                                                                                
                                  30
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PVI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PVI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PVI)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4PVI)

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 Related Entries

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UniProtKB/TrEMBL
        A0A059U759_9 | A0A059U759: 4pva

(-) Related Entries Specified in the PDB File

4pva