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(-) Description

Title :  CRYSTAL STRUCTURE OF GH62 HYDROLASE FROM THERMOPHILIC FUNGUS SCYTALIDIUM THERMOPHILUM
 
Authors :  B. Nocek, A. P. Kaur, X. Xu, H. Cui, A. Savchenko
Date :  15 Mar 14  (Deposition) - 19 Nov 14  (Release) - 06 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.23
Chains :  Asym./Biol. Unit :  A
Keywords :  Arabinofuranosidase, Arabinofuranohydrolase, Gh62 Hydrolase, Fungal Genomics, Arabinoxylan, Lignocellulose Degradation, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kaur, B. P. Nocek, X. Xu, M. J. Lowden, J. F. Leyva, P. J. Stogios, H. Cui, R. Di Leo, J. Powlowski, A. Tsang, A. Savchenko
Functional And Structural Diversity In Gh62 Alpha-L-Arabinofuranosidases From The Thermophilic Fungus Scytalidium Thermophilum.
Microb Biotechnol V. 8 419 2015
PubMed-ID: 25267315  |  Reference-DOI: 10.1111/1751-7915.12168

(-) Compounds

Molecule 1 - GH62 HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: SCYTALIDIUM THERMOPHILUM
    Organism Taxid: 85995

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE4Mod. Amino AcidSELENOMETHIONINE
3PO45Ligand/IonPHOSPHATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:35 , SER A:36 , LEU A:219 , GLY A:271 , GLN A:272 , TRP A:273 , GLY A:294 , HOH A:642 , HOH A:726 , HOH A:753BINDING SITE FOR RESIDUE GOL A 501
2AC2SOFTWAREARG A:108 , GLU A:117 , LYS A:120 , ASN A:128 , HOH A:727 , HOH A:743 , HOH A:885 , HOH A:927 , HOH A:999BINDING SITE FOR RESIDUE PO4 A 502
3AC3SOFTWAREARG A:48 , ILE A:50 , LYS A:73 , ASP A:99 , HOH A:737 , HOH A:764 , HOH A:1056 , HOH A:1095 , HOH A:1104 , HOH A:1108BINDING SITE FOR RESIDUE PO4 A 503
4AC4SOFTWAREASP A:178 , ARG A:236 , GLU A:241 , HOH A:1042BINDING SITE FOR RESIDUE PO4 A 504
5AC5SOFTWARELYS A:54 , GLU A:230 , ARG A:259 , HIS A:303 , GLN A:328 , TYR A:338 , HOH A:624 , HOH A:672 , HOH A:747 , HOH A:857BINDING SITE FOR RESIDUE PO4 A 505
6AC6SOFTWAREASP A:177 , HIS A:188 , ARG A:268 , ILE A:269 , ASP A:270 , HOH A:611BINDING SITE FOR RESIDUE PO4 A 506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PVA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:208 -Pro A:209

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PVA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PVA)

(-) Exons   (0, 0)

(no "Exon" information available for 4PVA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee...............eeeeeeeeee..eeeeeeeeee..eeeeeeeee.hhhhhhhh..ee.hhh.......eeeeeeeehhhheeeeeee...eeeeee....hhhhh...ee......hhhhhhhh.....eeeeeee.........eeeeeee....eeeeeeee...........eeeee...hhhhhheeeeeeee........eeeeeeee.hhh.eeeeeeee.......ee..............eee.........eeeee.........ee......eeeeee.......hhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pva A  -7 ENLYFQGSSWKWVSTGPLVFPKNDERNIAGIKDPTAVLINGTYHVFASTAKSEGYNmVYFNFTDFAEANNAPFYYLDQAPLGYGYRAAPQVFYFEPHKLWYLVYQNGNAAYSTNPDINDPSKWTAPEVFYPNGmPKIIADNIGNGYWVDmWVVCDDEEDPNKALCHLFSSDDNGHLYRSQTTLAQFPRGmSEPEIVLQDTQNIYALWEAACIYRIKGAEGTQKYLLLVEAIGQEGHRYFRSWTSDRIDGQWIPLADTEANPWAGEANVVFEGQKWTKSISHGEVIRTLTDQTLTLDLSEPIQFLYQGVDPNAQTEYNALPWRLGLITQ 350
                                  ||32        42        52        62        72      | 82        92       102       112       122       132       142       152   |   162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342        
                                 -1|                                               79-MSE                                                                      156-MSE         172-MSE                                 212-MSE                                                                                                                                      
                                  30
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PVA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PVA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PVA)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4PVA)

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        A0A059U759_9 | A0A059U759: 4pvi

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4pvi