Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF KRS COMPLEXED WITH INHIBITOR
 
Authors :  A. Sharma, M. Yogavel, S. Khan, A. Sharma, H. Belrhali
Date :  01 May 14  (Deposition) - 16 Jul 14  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Inhibitor, Krs, Complex, Ligase-Ligase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Khan, A. Sharma, H. Belrhali, M. Yogavel, A. Sharma
Structural Basis Of Malaria Parasite Lysyl-Trna Synthetase Inhibition By Cladosporin.
J. Struct. Funct. Genomics V. 15 63 2014
PubMed-ID: 24935905  |  Reference-DOI: 10.1007/S10969-014-9182-1

(-) Compounds

Molecule 1 - LYSINE--TRNA LIGASE
    Chains: A, B, C, D
    EC Number: 6.1.1.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM-41
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: UNP RESIDUES 77-583
    Gene: PF13_0262
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: ISOLATE 3D7
    Synonym: LYSYL-TRNA SYNTHETASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1KRS4Ligand/IonCLADOSPORIN
2LYS4Mod. Amino AcidLYSINE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1KRS2Ligand/IonCLADOSPORIN
2LYS2Mod. Amino AcidLYSINE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1KRS2Ligand/IonCLADOSPORIN
2LYS2Mod. Amino AcidLYSINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:306 , GLU A:308 , ARG A:330 , GLU A:346 , TYR A:348 , ASN A:503 , TYR A:505 , GLU A:507 , GLY A:552binding site for residue LYS A 601
2AC2SOFTWAREARG A:330 , GLU A:332 , THR A:337 , HIS A:338 , ASN A:339 , PHE A:342 , GLU A:500 , VAL A:501 , LEU A:502 , ASN A:503 , GLY A:556 , ARG A:559 , ILE A:570 , HOH A:771binding site for residue KRS A 602
3AC3SOFTWAREGLY B:284 , GLU B:308 , ARG B:330 , GLU B:346 , TYR B:348 , ASN B:503 , TYR B:505 , GLU B:507 , GLY B:552 , KRS B:602binding site for residue LYS B 601
4AC4SOFTWAREARG B:330 , GLU B:332 , THR B:337 , HIS B:338 , ASN B:339 , PHE B:342 , SER B:344 , GLU B:500 , VAL B:501 , LEU B:502 , GLY B:554 , GLY B:556 , ARG B:559 , LYS B:601 , HOH B:705binding site for residue KRS B 602
5AC5SOFTWAREGLY C:284 , ALA C:285 , GLU C:308 , ARG C:330 , GLU C:346 , TYR C:348 , ASN C:503 , TYR C:505 , GLU C:507 , KRS C:602 , HOH C:719binding site for residue LYS C 601
6AC6SOFTWAREARG C:330 , GLU C:332 , THR C:337 , HIS C:338 , ASN C:339 , PHE C:342 , GLU C:500 , VAL C:501 , ASN C:503 , GLY C:556 , ARG C:559 , ILE C:570 , LYS C:601binding site for residue KRS C 602
7AC7SOFTWAREGLY D:284 , ALA D:306 , GLU D:308 , ARG D:330 , GLU D:346 , TYR D:348 , ASN D:503 , TYR D:505 , GLU D:507 , GLY D:552 , HOH D:747binding site for residue LYS D 601
8AC8SOFTWAREARG D:330 , GLU D:332 , THR D:337 , HIS D:338 , ASN D:339 , PHE D:342 , GLU D:500 , VAL D:501 , ASN D:503 , GLY D:554 , GLY D:556 , ARG D:559 , ILE D:570 , HOH D:717binding site for residue KRS D 602

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:517 -A:540
2B:517 -B:540
3C:517 -C:540
4D:517 -D:540

(-) Cis Peptide Bonds  (17, 17)

Asymmetric Unit
No.Residues
1Gly A:283 -Gly A:284
2Pro A:396 -Pro A:397
3Gln A:417 -Pro A:418
4Asn A:441 -Pro A:442
5Lys B:228 -Asp B:229
6Gly B:283 -Gly B:284
7Pro B:396 -Pro B:397
8Gln B:417 -Pro B:418
9Asn B:441 -Pro B:442
10Lys C:228 -Asp C:229
11Gly C:283 -Gly C:284
12Pro C:396 -Pro C:397
13Gln C:417 -Pro C:418
14Gly D:283 -Gly D:284
15Pro D:396 -Pro D:397
16Gln D:417 -Pro D:418
17Asn D:441 -Pro D:442

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PG3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PG3)

(-) Exons   (0, 0)

(no "Exon" information available for 4PG3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:485
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.............hhhhhhhhhh............eeeeeeeeee......eeeeeeee..eeeeeeee.........hhhhhhhhh....eeeeeeeeee.....eeeeeeeeeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.....ee...........eeee....eeeee...hhhhhhhhhhh...eeeeeeeee...........eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeee.........eeee......eeehhhhhhhh..........hhhhhhhhhhhhhhh........hhhhhhhhhhhhhh........eeee..hhhhh..............eeeeee..eeeeeeee...hhhhh.....hhhhhhhhh.....eeeeeeehhhhhhhhh...hhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pg3 A  80 PRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNITGRIMRVSASGQKLRFFDLVGDGEKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETILLSACLHMLPMKYGLTEIRYRQRYLDLLINESSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIAGGANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIEKVTNTILEQPFDSNETIEKMINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGLTERLEMFICGKEVLNAYTELNDPFKQKECFLDSAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRPK 601
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511      |537       547       557       567       577   ||
                                                                                                                                                                             227|                                                                                                                                                                                                                                                                                             518|                                           581|
                                                                                                                                                                              230                                                                                                                                                                                                                                                                                              535                                            601


Chain B from PDB  Type:PROTEIN  Length:487
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.............hhhhhhhhhh............eeeeeeeeeeee....eeeeeeee..eeeeeeee.........hhhhhhhh.....eeeeeeeeee.....eeeeeeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee.....ee...........eeee....eeeee...hhhhhhhhhhh...eeeeeeeee...........eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeee.........eeee......eeehhhhhhhhhh........hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh........eeee..hhhhh..............eeeeee..eeeeeeee...hhhhh.....hhhhhhhhh.....eeeeeeehhhhhhhhh...hhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pg3 B  80 PRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNITGRIMRVSASGQKLRFFDLVGDGEKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETILLSACLHMLPMKYGLKDTEIRYRQRYLDLLINESSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIAGGANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIEKVTNTILEQPFDSNETIEKMINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGLTERLEMFICGKEVLNAYTELNDPFKQKECFLDSAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRPK 601
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       535       545       555       565       575     ||
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                518|                                           581|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 535                                            601


Chain C from PDB  Type:PROTEIN  Length:481
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.............hhhhhhhhhh............eeeeeeeeeeeee...eeeeeeee..eeeeeeee.........hhhhhhh......eeeeeeeeee.....eeeeeeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.....ee..........eeeee....eeeee...hhhhhhhhhhh...eeeeeeeee...........eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeee.........eeee......eeehhhhhhhhh.........hhhhhhhhhhhhhhh..hhhhhhhhhhhhhh........eeee..hhhhh..............eeeeee..eeeeeeee...hhhhh.....hhhhhhhhh.....eeeeeeehhhhhhhhh...hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pg3 C  80 PRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNITGRIMRVSASGQKLRFFDLVGDGEKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETILLSACLHMLPMKYGLKDTEIRYRQRYLDLLINESSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIAGGANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIEKVTNTILEQPFDSNETIEKMINIIKEHPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGLTERLEMFICGKEVLNAYTELNDPFKQKECFLDSAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRPK 601
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429     ||445       455       465       475       485       495       505       515  ||   541       551       561       571       581|
                                                                                                                                                                                                                                                                                                                                                                                             435|                                                                         518|                                           581|
                                                                                                                                                                                                                                                                                                                                                                                              442                                                                          535                                            601


Chain D from PDB  Type:PROTEIN  Length:485
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.............hhhhhhhhhh............eeeeeeeeee......eeeeeeee..eeeeeeee.hhhhhhhhhhhhhhhh.....eeeeeeeeee.....eeeeeeeeeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.....ee..........eeeee....eeeee...hhhhhhhhhhh...eeeeeeeee...........eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeee.........eeee......eeehhhhhhhhhh........hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh........eeee.....................eeeeee..eeeeeeee.......hhhhh.hhhhhhhhh.....eeeeeeehhhhhhhhh...hhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pg3 D  80 PRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNITGRIMRVSASGQKLRFFDLVGDGEKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETILLSACLHMLPMKYGLTEIRYRQRYLDLLINESSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIAGGANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIEKVTNTILEQPFDSNETIEKMINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGLTERLEMFICGKEVLNAYTELNDPFKQKECFLDSAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRPK 601
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511      |537       547       557       567       577   ||
                                                                                                                                                                             227|                                                                                                                                                                                                                                                                                             518|                                           581|
                                                                                                                                                                              230                                                                                                                                                                                                                                                                                              535                                            601
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PG3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PG3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PG3)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    KRS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    LYS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asn A:441 - Pro A:442   [ RasMol ]  
    Asn B:441 - Pro B:442   [ RasMol ]  
    Asn D:441 - Pro D:442   [ RasMol ]  
    Gln A:417 - Pro A:418   [ RasMol ]  
    Gln B:417 - Pro B:418   [ RasMol ]  
    Gln C:417 - Pro C:418   [ RasMol ]  
    Gln D:417 - Pro D:418   [ RasMol ]  
    Gly A:283 - Gly A:284   [ RasMol ]  
    Gly B:283 - Gly B:284   [ RasMol ]  
    Gly C:283 - Gly C:284   [ RasMol ]  
    Gly D:283 - Gly D:284   [ RasMol ]  
    Lys B:228 - Asp B:229   [ RasMol ]  
    Lys C:228 - Asp C:229   [ RasMol ]  
    Pro A:396 - Pro A:397   [ RasMol ]  
    Pro B:396 - Pro B:397   [ RasMol ]  
    Pro C:396 - Pro C:397   [ RasMol ]  
    Pro D:396 - Pro D:397   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4pg3
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q8IDJ8_PLAF7 | Q8IDJ8
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  6.1.1.6
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q8IDJ8_PLAF7 | Q8IDJ8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8IDJ8_PLAF7 | Q8IDJ8: 4h02

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4PG3)