Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF P. FALCIPARUM LYSYL-TRNA SYNTHETASE
 
Authors :  S. Khan, A. Garg, A. Sharma
Date :  07 Sep 12  (Deposition) - 01 May 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Cladosporin, Malaria, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Khan, A. Garg, N. Camacho, J. Van Rooyen, A. Kumar Pole, H. Belrhali, L. Ribas De Pouplana, V. Sharma, A. Sharma
Structural Analysis Of Malaria-Parasite Lysyl-Trna Synthetase Provides A Platform For Drug Development.
Acta Crystallogr. , Sect. D V. 69 785 2013
PubMed-ID: 23633587  |  Reference-DOI: 10.1107/S0907444913001923

(-) Compounds

Molecule 1 - LYSYL-TRNA SYNTHETASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 6.1.1.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PETM-41
    Fragment: UNP RESIDUES 77-583
    Gene: PF13_0262
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: 3D7

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4H02)

(-) Sites  (0, 0)

(no "Site" information available for 4H02)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H02)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Lys A:228 -Asp A:229
2Pro A:396 -Pro A:397
3Lys B:228 -Asp B:229
4Pro B:396 -Pro B:397
5Lys C:228 -Asp C:229
6Pro C:396 -Pro C:397
7Lys D:228 -Asp D:229
8Pro D:396 -Pro D:397
9Lys E:228 -Asp E:229
10Pro E:396 -Pro E:397
11Lys F:228 -Asp F:229
12Pro F:396 -Pro F:397
13Lys G:228 -Asp G:229
14Pro G:396 -Pro G:397
15Lys H:228 -Asp H:229
16Pro H:396 -Pro H:397

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H02)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H02)

(-) Exons   (0, 0)

(no "Exon" information available for 4H02)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:469
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4h02a1 A:80-228 automated matches                                                                                                                   d4h02a2 A:229-581 automated matches                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.............hhhhhhhhhh............eeeeeeeeeeee....eeeeeeee..eeeeeeee.........hhhhhhh......eeeeeeeeee.....eeeeeeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........ee....eeee....eeeee...hhhhhhhhhhh...eeeeeeeee...........eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeee.........eeee......eeehhhhhhhhhh.........hhhhhhhhhhhhhh........hhhhhhhhhhhhhh........eeee..hhhhh...............eeeee..eeeeeeee........hhhhhh...eeeeeeehhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h02 A  80 PRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNITGRIMRVSASGQKLRFFDLVGDGEKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETILLSACLHMLPMKYGLKDTEIRYRQRYLDLLINESSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIEKVTNTILEQPFDSNETIEKMINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGLTERLEMFICGKEVLNAYTELNDPFFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRP 581
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279 ||    296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506     ||542       552       562       572         
                                                                                                                                                                                                                                   281|                                                                                                                                                                                                                            512|                                          
                                                                                                                                                                                                                                    289                                                                                                                                                                                                                             539                                          


Chain B from PDB  Type:PROTEIN  Length:471
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4h02b1 B:80-228 automated matches                                                                                                                   d4h02b2 B:229-581 automated matches                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh............hhhhhhhhhh............eeeeeeeeeeee....eeeeeeee..eeeeeeee.hhh.....hhhhhhhhh....eeeeeeeeee.....eeeeeeeeeeee..............hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee.....ee....eeeehhhheeeee...hhhhhhhhhhh...eeeeeeeee...........eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh...eeee.........eeee......eeehhhhhhhhh..........hhhhhhhhhhhhhh........hhhhhhhhhhhhhh........eeee......................eeeee..eeeeeeee.........hhhhh.....eeeeeehhhhhhhhhh...hhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h02 B  80 PRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNITGRIMRVSASGQKLRFFDLVGDGEKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETILLSACLHMLPMKYGLKDTEIRYRQRYLDLLINESSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIEKVTNTILEQPFDSNETIEKMINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGLTERLEMFICGKEVLNAYTELNDPFKQFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRP 581
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279 ||    296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       540       550       560       570       580 
                                                                                                                                                                                                                                   281|                                                                                                                                                                                                                              514|                                          
                                                                                                                                                                                                                                    289                                                                                                                                                                                                                               539                                          


Chain C from PDB  Type:PROTEIN  Length:471
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4h02c1 C:80-228 automated matches                                                                                                                   d4h02c2 C:229-583 automated matches                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.............hhhhhhhhhh............eeeeeeeeeeee....eeeeeeee..eeeeeeee.........hhhhhhhh.....eeeeeeeeee.....eeeeeeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee.....ee....eeee....eeeee...hhhhhhhhhhh...eeeeeeeee...........eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeee.........eeee......eee.hhhhhhhhh.........hhhhhhhhhhhhhh........hhhhhhhhhhhhhh........eeee..hhhhh...............eeeee..eeeeeeee.......hhhhh.....eeeeeeehhhhhhhhh...hhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h02 C  80 PRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNITGRIMRVSASGQKLRFFDLVGDGEKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETILLSACLHMLPMKYGLKDTEIRYRQRYLDLLINESSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIEKVTNTILEQPFDSNETIEKMINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGLTERLEMFICGKEVLNAYTELNDPFFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRPAN 583
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279 ||    296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506     ||542       552       562       572       582 
                                                                                                                                                                                                                                   281|                                                                                                                                                                                                                            512|                                            
                                                                                                                                                                                                                                    289                                                                                                                                                                                                                             539                                            


Chain D from PDB  Type:PROTEIN  Length:471
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4h02d1 D:80-228 automated matches                                                                                                                   d4h02d2 D:229-581 automated matches                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.............hhhhhhhhhh............eeeeeee...eee...eeeeeeee..eeeee............hhhhhhh......eeeeeeeeee.....eeeeeeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee.....ee...eeeee....eeeee...hhhhhhhhhhh...eeeeeeeee...........eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeee.........eeee......eeehhhhhhhhhh.........hhhhhhhhhhhhhh........hhhhhhhhhhhhhh........eeee......................eeeee..eeeeeeee...hhhhh..hhhhhh...eeeeeeehhhhhhhhhh..hhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h02 D  80 PRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNITGRIMRVSASGQKLRFFDLVGDGEKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETILLSACLHMLPMKYGLKDTEIRYRQRYLDLLINESSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIEKVTNTILEQPFDSNETIEKMINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGLTERLEMFICGKEVLNAYTELNDPFKQFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRP 581
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279 ||    296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       540       550       560       570       580 
                                                                                                                                                                                                                                   281|                                                                                                                                                                                                                              514|                                          
                                                                                                                                                                                                                                    289                                                                                                                                                                                                                               539                                          


Chain E from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4h02e1 E:80-228 automated matches                                                                                                                   d4h02e2 E:229-581 automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.............hhhhhhhhhh............eeeeeeeeeeee....eeeeeeee..eeeeeeee.hhh.....hhhhhhh......eeeeeeeeee.....eeeeeeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee.....ee....eeee....eeeee...hhhhhhhhhhhh..eeeeeeeee...........eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeee.........eeee......eeehhhhhhhhhh.........hhhhhhhhhhhhhh........hhhhhhhhhhhhhh........eeee..hhhhh...............eeeee..eeeeeeee..........hhhhhh..eeeeeeehhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h02 E  80 PRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNITGRIMRVSASGQKLRFFDLVGDGEKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETILLSACLHMLPMKYGLKDTEIRYRQRYLDLLINESSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIEKVTNTILEQPFDSNETIEKMINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGLTERLEMFICGKEVLNAYTELNDPFKFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRP 581
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279 ||    296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506      |541       551       561       571       581
                                                                                                                                                                                                                                   281|                                                                                                                                                                                                                             513|                                          
                                                                                                                                                                                                                                    289                                                                                                                                                                                                                              539                                          


Chain F from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4h02f1 F:80-228 automated matches                                                                                                                   d4h02f2 F:229-581 automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.............hhhhhhhhhh............eeeeeeeeeeeee...eeeeeee....eeeeeee.........hhhhhhh......eeeeeeeeee.....eeeeeeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee...........eeee....eeee....hhhhhhhhhhh...eeeeeeeee...........eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeee.........eeee......eeehhhhhhhhhh.........hhhhhhhhhhhhhh........hhhhhhhhhhhhhh........eeee......................eeeee..eeeeeeee.........hhhhhh...eeeeeeehhhhhhhhh...hhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h02 F  80 PRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNITGRIMRVSASGQKLRFFDLVGDGEKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETILLSACLHMLPMKYGLKDTEIRYRQRYLDLLINESSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIEKVTNTILEQPFDSNETIEKMINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGLTERLEMFICGKEVLNAYTELNDPFKFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRP 581
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279 ||    296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506      |541       551       561       571       581
                                                                                                                                                                                                                                   281|                                                                                                                                                                                                                             513|                                          
                                                                                                                                                                                                                                    289                                                                                                                                                                                                                              539                                          


Chain G from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4h02g1 G:80-228 automated matches                                                                                                                   d4h02g2 G:229-581 automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.............hhhhhhhhhh............eeeeeeeeeeeee...eeeeeeee..eeeeeeee.........hhhhhhhh.....eeeeeeeeee.....eeeeeeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee.....ee....eeee....eeeee...hhhhhhhhhhh...eeeeeeeee...........eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeee.........eeee......eeehhhhhhhhhh.........hhhhhhhhhhhhhh........hhhhhhhhhhhhhh........eeee..hhhhh...............eeeee..eeeeeeee........hhhhhh....eeeeeeehhhhhhhhh...hhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h02 G  80 PRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNITGRIMRVSASGQKLRFFDLVGDGEKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETILLSACLHMLPMKYGLKDTEIRYRQRYLDLLINESSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIEKVTNTILEQPFDSNETIEKMINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGLTERLEMFICGKEVLNAYTELNDPFKFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRP 581
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279 ||    296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506      |541       551       561       571       581
                                                                                                                                                                                                                                   281|                                                                                                                                                                                                                             513|                                          
                                                                                                                                                                                                                                    289                                                                                                                                                                                                                              539                                          


Chain H from PDB  Type:PROTEIN  Length:471
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4h02h1 H:80-228 automated matches                                                                                                                   d4h02h2 H:229-581 automated matches                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.............hhhhhhhhhh............eeeeeeeeeeeee...eeeeeeee..eeeeeeee.........hhhhhhh......eeeeeeeeee.....eeeeeeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.....ee....eeeehhhheeeee...hhhhhhhhhhh...eeeeeeeee...........eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeee.........eeee......eeehhhhhhhhhh.........hhhhhhhhhhhhhh........hhhhhhhhhhhhhh........eeee......................eeeee..eeeeeeee..........hhhhhh...eeeeeeehhhhhhhhhh..hhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h02 H  80 PRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNITGRIMRVSASGQKLRFFDLVGDGEKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETILLSACLHMLPMKYGLKDTEIRYRQRYLDLLINESSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIEKVTNTILEQPFDSNETIEKMINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGLTERLEMFICGKEVLNAYTELNDPFKQFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRP 581
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279 ||    296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       540       550       560       570       580 
                                                                                                                                                                                                                                   281|                                                                                                                                                                                                                              514|                                          
                                                                                                                                                                                                                                    289                                                                                                                                                                                                                               539
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H02)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H02)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4h02)
 
  Sites
(no "Sites" information available for 4h02)
 
  Cis Peptide Bonds
    Lys A:228 - Asp A:229   [ RasMol ]  
    Lys B:228 - Asp B:229   [ RasMol ]  
    Lys C:228 - Asp C:229   [ RasMol ]  
    Lys D:228 - Asp D:229   [ RasMol ]  
    Lys E:228 - Asp E:229   [ RasMol ]  
    Lys F:228 - Asp F:229   [ RasMol ]  
    Lys G:228 - Asp G:229   [ RasMol ]  
    Lys H:228 - Asp H:229   [ RasMol ]  
    Pro A:396 - Pro A:397   [ RasMol ]  
    Pro B:396 - Pro B:397   [ RasMol ]  
    Pro C:396 - Pro C:397   [ RasMol ]  
    Pro D:396 - Pro D:397   [ RasMol ]  
    Pro E:396 - Pro E:397   [ RasMol ]  
    Pro F:396 - Pro F:397   [ RasMol ]  
    Pro G:396 - Pro G:397   [ RasMol ]  
    Pro H:396 - Pro H:397   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Biol. Unit 1 PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4h02
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q8IDJ8_PLAF7 | Q8IDJ8
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  6.1.1.6
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q8IDJ8_PLAF7 | Q8IDJ8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8IDJ8_PLAF7 | Q8IDJ8: 4pg3

(-) Related Entries Specified in the PDB File

3bju