4PCO - JenaLib

Title :   CRYSTAL STRUCTURE OF DOUBLE-STRANDED RNA WITH FOUR TERMINAL GU WOBBLE BASE PAIRS

Authors :   B. H. M. Mooers

Date :   16 Apr 14 (Deposition) - 14 Oct 15 (Release) - 27 Jan 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.32

Chains :   Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E  (2x)

Keywords :   Gu Wobble Base Pair Motif, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. Gu, B. H. Mooers, L. M. Thomas, J. Malone, S. Harris, S. J. Schroeder
Structures And Energetics Of Four Adjacent Gu Pairs That Stabilize An Rna Helix.
J. Phys. Chem. B V. 119 13252 2015
PubMed-ID: 26425937 | Reference-DOI: 10.1021/ACS.JPCB.5B06970

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 15)

Asymmetric Unit (2, 15)

No.	Name	Count	Type	Full Name
1	CL	3	Ligand/Ion	CHLORIDE ION
2	NCO	12	Ligand/Ion	COBALT HEXAMMINE(III)

Biological Unit 1 (1, 6)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NCO	6	Ligand/Ion	COBALT HEXAMMINE(III)

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NCO	4	Ligand/Ion	COBALT HEXAMMINE(III)

Biological Unit 3 (1, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NCO	4	Ligand/Ion	COBALT HEXAMMINE(III)

Sites (15, 15)

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	G A:1 , G A:2 , U A:3 , U B:7 , G B:8 , U B:9 , U B:10 , CL B:104 , HOH B:230 , HOH B:236 , HOH E:203	binding site for residue NCO A 101
02	AC2	SOFTWARE	U A:9 , U A:10 , CL A:105 , HOH A:210 , HOH A:212 , G C:1	binding site for residue NCO A 102
03	AC3	SOFTWARE	G A:4 , G A:5 , HOH A:205 , HOH A:215 , G C:1 , G C:2	binding site for residue NCO A 103
04	AC4	SOFTWARE	G A:2 , U A:9 , U B:9	binding site for residue CL A 104
05	AC5	SOFTWARE	NCO A:102 , NCO B:101 , NCO C:101	binding site for residue CL A 105
06	AC6	SOFTWARE	U A:7 , G A:8 , U A:9 , U A:10 , CL A:105 , G B:1 , G B:2 , U B:3 , HOH B:204	binding site for residue NCO B 101
07	AC7	SOFTWARE	U A:3 , G A:4 , G A:5 , C A:6 , HOH A:222 , HOH A:236 , U B:3 , G B:4 , G B:5 , C B:6 , HOH B:209 , HOH B:215 , HOH B:236 , HOH B:240	binding site for residue NCO B 102
08	AC8	SOFTWARE	U B:9 , U B:10 , CL B:104 , HOH B:213 , HOH B:246 , G E:1	binding site for residue NCO B 103
09	AC9	SOFTWARE	NCO A:101 , NCO B:103 , NCO E:101	binding site for residue CL B 104
10	AD1	SOFTWARE	CL A:105 , G B:1 , G C:1 , G C:2 , U D:7 , U D:9 , U D:10 , HOH D:210 , HOH D:214 , HOH D:223	binding site for residue NCO C 101
11	AD2	SOFTWARE	U C:3 , G C:4 , G C:5 , HOH C:205 , HOH C:217 , G D:5 , U D:7	binding site for residue NCO C 102
12	AD3	SOFTWARE	U C:9 , U C:10 , HOH C:226 , G D:1	binding site for residue NCO C 103
13	AD4	SOFTWARE	U C:7 , G C:8 , U C:9 , U C:10 , G D:1 , G D:2 , U D:3 , HOH D:216	binding site for residue NCO D 101
14	AD5	SOFTWARE	CL B:104 , G E:1 , G E:2 , U E:3 , U E:7 , G E:8 , U E:9 , U E:10	binding site for residue NCO E 101
15	AD6	SOFTWARE	U E:3 , G E:4 , G E:5 , C E:6 , HOH E:211 , HOH E:213 , HOH E:227	binding site for residue NCO E 102

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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Chain A from PDB  Type:RNA  Length:10
                                         
                  4pco A  1 GGUGGCUGUU 10
                                    10

Chain B from PDB  Type:RNA  Length:10
                                         
                  4pco B  1 GGUGGCUGUU 10
                                    10

Chain C from PDB  Type:RNA  Length:10
                                         
                  4pco C  1 GGUGGCUGUU 10
                                    10

Chain D from PDB  Type:RNA  Length:10
                                         
                  4pco D  1 GGUGGCUGUU 10
                                    10

Chain E from PDB  Type:RNA  Length:10
                                         
                  4pco E  1 GGUGGCUGUU 10
                                    10

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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