Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Helix Analysis Home]
[Image Library Entry] [Analyse Helix]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF DOUBLE-STRANDED RNA WITH FOUR TERMINAL BASE PAIRS
Keywords GU WOBBLE BASE PAIR MOTIF, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4PCO     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 10 320 0
2  RNA    B 10 320 0
3  RNA    C 10 309 0
4  RNA    D 10 319 0
5  RNA    E 10 320 0
6  Ligand   RNA (5'-D(*GP*GP*UP*GP*GP*CP*UP*GP*UP*U)-3')  A 5 0 23
7  Ligand   RNA (5'-D(*GP*GP*UP*GP*GP*CP*UP*GP*UP*U)-3')  B 4 0 22
8  Ligand   RNA (5'-D(*GP*GP*UP*GP*GP*CP*UP*GP*UP*U)-3')  C 3 0 21
9  Ligand   RNA (5'-D(*GP*GP*UP*GP*GP*CP*UP*GP*UP*U)-3')  D 1 0 7
10  Ligand   RNA (5'-D(*GP*GP*UP*GP*GP*CP*UP*GP*UP*U)-3')  E 2 0 14
11 Water     190 0 190
total       255 1588 277

Nucleic acids
Unit 1 G1 G2 U3 G4 G5 C6 U7 G8 U9 U10
Unit 2 G1 G2 U3 G4 G5 C6 U7 G8 U9 U10
Unit 3 G1 G2 U3 G4 G5 C6 U7 G8 U9 U10
Unit 4 G1 G2 U3 G4 G5 C6 U7 G8 U9 U10
Unit 5 G1 G2 U3 G4 G5 C6 U7 G8 U9 U10

Ligands
Unit 6 NCO101 NCO102 NCO103 CL104 CL105
Unit 7 NCO101 NCO102 NCO103 CL104
Unit 8 NCO101 NCO102 NCO103
Unit 9 NCO101
Unit 10 NCO101 NCO102

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


Go to    [Image Library Home]    [Helix Analysis Home]    [Image Library Entry]    [Analyse Helix]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany