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Title :   CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM HAEMOPHILUS INFLUENZAE RDAW (HICG_00826, TARGET EFI-510123) WITH BOUND L-GULONATE

Authors :   M. W. Vetting, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, M. Stead, J. D. Attonito, A. Scott Glenn, S. Chowdhury, B. Evans, B. Hillerich, R. D. Seidel, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function In (Efi)

Date :   13 Apr 14 (Deposition) - 07 May 14 (Release) - 26 Aug 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Trap Periplasmic Solute Binding Family, Enzyme Function Initiative, Efi, Structural Genomics, Solute-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. W. Vetting, N. Al-Obaidi, S. Zhao, B. San Francisco, J. Kim, D. J. Wichelecki, J. T. Bouvier, J. O. Solbiati, H. Vu, X. Zhang, D. A. Rodionov, J. D. Love, B. S. Hillerich, R. D. Seidel, R. J. Quinn, A. L. Osterman, J. E. Cronan, M. P. Jacobson, J. A. Gerlt, S. C. Almo
Experimental Strategies For Functional Annotation And Metabolism Discovery: Targeted Screening Of Solute Binding Proteins And Unbiased Panning Of Metabolomes.
Biochemistry V. 54 909 2015
PubMed-ID: 25540822 | Reference-DOI: 10.1021/BI501388Y

Molecule 1 - PUTATIVE TRAP PERIPLASMIC SOLUTE BINDING PROTEIN
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	HICG_00826
	Organism Scientific	:	HAEMOPHILUS INFLUENZAE
	Organism Taxid	:	656912
	Strain	:	RDAW

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 29)

No.	Name	Count	Type	Full Name
1	2UF	3	Ligand/Ion	L-GULONATE
2	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	18	Mod. Amino Acid	SELENOMETHIONINE
4	PEG	3	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 9)

No.	Name	Count	Type	Full Name
1	2UF	1	Ligand/Ion	L-GULONATE
2	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
4	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 8)

No.	Name	Count	Type	Full Name
1	2UF	1	Ligand/Ion	L-GULONATE
2	MES	-1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
4	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 3 (4, 12)

No.	Name	Count	Type	Full Name
1	2UF	1	Ligand/Ion	L-GULONATE
2	MES	-1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
4	PEG	3	Ligand/Ion	DI(HYDROXYETHYL)ETHER
5	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:33 , GLU A:73 , GLY A:91 , LEU A:92 , LEU A:93 , GLU A:105 , ARG A:148 , ARG A:168 , PRO A:170 , ASN A:172 , PHE A:175 , LEU A:191 , ASN A:208 , HOH A:581 , HOH A:584 , HOH A:906	binding site for residue 2UF A 401
02	AC2	SOFTWARE	ARG A:81 , HOH C:505	binding site for residue SO4 A 402
03	AC3	SOFTWARE	LEU A:70 , GLN A:75 , GLY A:79 , ASN A:82 , THR A:84 , ILE A:85 , HOH A:780 , SER B:188	binding site for residue MES A 403
04	AC4	SOFTWARE	TYR B:33 , GLU B:73 , GLY B:91 , LEU B:92 , LEU B:93 , GLU B:105 , ARG B:148 , ARG B:168 , PRO B:170 , ASN B:172 , PHE B:175 , LEU B:191 , ASN B:208 , HOH B:552 , HOH B:555 , HOH B:558 , HOH B:573	binding site for residue 2UF B 401
05	AC5	SOFTWARE	LYS B:29 , ARG B:63 , TYR B:65 , HOH B:899 , LYS C:134	binding site for residue SO4 B 402
06	AC6	SOFTWARE	TYR C:33 , GLU C:73 , GLY C:91 , LEU C:92 , GLU C:105 , ARG C:148 , ARG C:168 , PRO C:170 , ASN C:172 , PHE C:175 , LEU C:191 , ASN C:208 , HOH C:569 , HOH C:573 , HOH C:576 , HOH C:587	binding site for residue 2UF C 401
07	AC7	SOFTWARE	LYS B:312 , ASP C:112 , ASN C:113 , GLN C:114 , HOH C:538 , HOH C:727	binding site for residue SO4 C 402
08	AC8	SOFTWARE	LYS A:180 , ASP C:36 , PRO C:66 , GLN C:69 , HOH C:800 , HOH C:835	binding site for residue SO4 C 403
09	AC9	SOFTWARE	ASN C:126 , LEU C:140 , HOH C:651	binding site for residue PEG C 404
10	AD1	SOFTWARE	GLU B:199 , GLU B:220 , VAL B:221 , VAL C:176 , GLN C:187 , SER C:188 , HOH C:839	binding site for residue PEG C 405
11	AD2	SOFTWARE	THR B:196 , HOH B:751 , HOH B:834 , LEU C:171 , ASN C:172 , SER C:173 , SER C:188 , HOH C:806 , HOH C:927	binding site for residue PEG C 406

(no "SS Bond" information available for 4PBQ)

(no "Cis Peptide Bond" information available for 4PBQ)

(no "SAP(SNP)/Variant" information available for 4PBQ)

(no "PROSITE Motif" information available for 4PBQ)

(no "Exon" information available for 4PBQ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeeee.....hhhhhh..eeee..hhhhhhhhhhh..eeee.hhhhhhhhhhh....eeeeehhhhhhhhhhhhh.eee.....eeeeeeeeehhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pbq A  25 KTIIKLGHYNSDIHPSHIALQEYFKKTIENETNHKYEIRLYPNNQLGGEDQIVNGLRNGTIEAGITGLLLQNVDPIFGVWEWPYLFKDNQEAKKVLESPIANKIGQKmEKYGIKLLAYGmNGFRVISSNKKLEKFDDFKGLRLRVPLNSLFVDWAKAmNINPQSmPLSEVFTALEQKVIDGQENPYmLIKDSGLYEVQKYIIQSNHIFSPGLLQISLKTWNKIPKEDQIIFEKAAKLYQEKEWELAIKTELEVKDYLAKHGNEIIVPSEAFKNDmVNASKVLYDSFYKKYDWAKDVVQKINEAK 328
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    |  194       204      |214       224       234       244       254       264       274       284       294    |  304       314       324    
                                                                                                                                     132-MSE     144-MSE                               182-MSE  |                   211-MSE                                                                                 299-MSE                         
                                                                                                                                                                                              189-MSE

Chain B from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeeee.....hhhhhh..eeee..hhhhhhhhhhh..eeee.hhhhhhhhhhh....eeeeehhhhhhhhhhhhh.eee.....eeeeeeeeehhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pbq B  25 KTIIKLGHYNSDIHPSHIALQEYFKKTIENETNHKYEIRLYPNNQLGGEDQIVNGLRNGTIEAGITGLLLQNVDPIFGVWEWPYLFKDNQEAKKVLESPIANKIGQKmEKYGIKLLAYGmNGFRVISSNKKLEKFDDFKGLRLRVPLNSLFVDWAKAmNINPQSmPLSEVFTALEQKVIDGQENPYmLIKDSGLYEVQKYIIQSNHIFSPGLLQISLKTWNKIPKEDQIIFEKAAKLYQEKEWELAIKTELEVKDYLAKHGNEIIVPSEAFKNDmVNASKVLYDSFYKKYDWAKDVVQKINEAK 328
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    |  194       204      |214       224       234       244       254       264       274       284       294    |  304       314       324    
                                                                                                                                     132-MSE     144-MSE                               182-MSE  |                   211-MSE                                                                                 299-MSE                         
                                                                                                                                                                                              189-MSE

Chain C from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeeee.....hhhhhh..eeee..hhhhhhhhhhh..eeee.hhhhhhhhhhh....eeeeehhhhhhhhhhhhh.eee.....eeeeeeeeehhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pbq C  25 KTIIKLGHYNSDIHPSHIALQEYFKKTIENETNHKYEIRLYPNNQLGGEDQIVNGLRNGTIEAGITGLLLQNVDPIFGVWEWPYLFKDNQEAKKVLESPIANKIGQKmEKYGIKLLAYGmNGFRVISSNKKLEKFDDFKGLRLRVPLNSLFVDWAKAmNINPQSmPLSEVFTALEQKVIDGQENPYmLIKDSGLYEVQKYIIQSNHIFSPGLLQISLKTWNKIPKEDQIIFEKAAKLYQEKEWELAIKTELEVKDYLAKHGNEIIVPSEAFKNDmVNASKVLYDSFYKKYDWAKDVVQKINEAK 328
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    |  194       204      |214       224       234       244       254       264       274       284       294    |  304       314       324    
                                                                                                                                     132-MSE     144-MSE                               182-MSE  |                   211-MSE                                                                                 299-MSE                         
                                                                                                                                                                                              189-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 29)

Sites (11, 11)

SS Bonds (0, 0)

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