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4PBQ
Asym. Unit
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Asym.Unit (500 KB)
Biol.Unit 1 (166 KB)
Biol.Unit 2 (164 KB)
Biol.Unit 3 (165 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM HAEMOPHILUS INFLUENZAE RDAW (HICG_00826, TARGET EFI-510123) WITH BOUND L-GULONATE
Authors
:
M. W. Vetting, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, M. Stead, J. D. Attonito, A. Scott Glenn, S. Chowdhury, B. Evans, B. Hillerich, R. D. Seidel, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function In (Efi)
Date
:
13 Apr 14 (Deposition) - 07 May 14 (Release) - 26 Aug 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Trap Periplasmic Solute Binding Family, Enzyme Function Initiative, Efi, Structural Genomics, Solute-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. W. Vetting, N. Al-Obaidi, S. Zhao, B. San Francisco, J. Kim, D. J. Wichelecki, J. T. Bouvier, J. O. Solbiati, H. Vu, X. Zhang, D. A. Rodionov, J. D. Love, B. S. Hillerich, R. D. Seidel, R. J. Quinn, A. L. Osterman, J. E. Cronan, M. P. Jacobson, J. A. Gerlt, S. C. Almo
Experimental Strategies For Functional Annotation And Metabolism Discovery: Targeted Screening Of Solute Binding Proteins And Unbiased Panning Of Metabolomes.
Biochemistry V. 54 909 2015
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Hetero Components
(5, 29)
Info
All Hetero Components
1a: L-GULONATE (2UFa)
1b: L-GULONATE (2UFb)
1c: L-GULONATE (2UFc)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
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Label:
No.
Name
Count
Type
Full Name
1
2UF
3
Ligand/Ion
L-GULONATE
2
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
4
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:33 , GLU A:73 , GLY A:91 , LEU A:92 , LEU A:93 , GLU A:105 , ARG A:148 , ARG A:168 , PRO A:170 , ASN A:172 , PHE A:175 , LEU A:191 , ASN A:208 , HOH A:581 , HOH A:584 , HOH A:906
binding site for residue 2UF A 401
02
AC2
SOFTWARE
ARG A:81 , HOH C:505
binding site for residue SO4 A 402
03
AC3
SOFTWARE
LEU A:70 , GLN A:75 , GLY A:79 , ASN A:82 , THR A:84 , ILE A:85 , HOH A:780 , SER B:188
binding site for residue MES A 403
04
AC4
SOFTWARE
TYR B:33 , GLU B:73 , GLY B:91 , LEU B:92 , LEU B:93 , GLU B:105 , ARG B:148 , ARG B:168 , PRO B:170 , ASN B:172 , PHE B:175 , LEU B:191 , ASN B:208 , HOH B:552 , HOH B:555 , HOH B:558 , HOH B:573
binding site for residue 2UF B 401
05
AC5
SOFTWARE
LYS B:29 , ARG B:63 , TYR B:65 , HOH B:899 , LYS C:134
binding site for residue SO4 B 402
06
AC6
SOFTWARE
TYR C:33 , GLU C:73 , GLY C:91 , LEU C:92 , GLU C:105 , ARG C:148 , ARG C:168 , PRO C:170 , ASN C:172 , PHE C:175 , LEU C:191 , ASN C:208 , HOH C:569 , HOH C:573 , HOH C:576 , HOH C:587
binding site for residue 2UF C 401
07
AC7
SOFTWARE
LYS B:312 , ASP C:112 , ASN C:113 , GLN C:114 , HOH C:538 , HOH C:727
binding site for residue SO4 C 402
08
AC8
SOFTWARE
LYS A:180 , ASP C:36 , PRO C:66 , GLN C:69 , HOH C:800 , HOH C:835
binding site for residue SO4 C 403
09
AC9
SOFTWARE
ASN C:126 , LEU C:140 , HOH C:651
binding site for residue PEG C 404
10
AD1
SOFTWARE
GLU B:199 , GLU B:220 , VAL B:221 , VAL C:176 , GLN C:187 , SER C:188 , HOH C:839
binding site for residue PEG C 405
11
AD2
SOFTWARE
THR B:196 , HOH B:751 , HOH B:834 , LEU C:171 , ASN C:172 , SER C:173 , SER C:188 , HOH C:806 , HOH C:927
binding site for residue PEG C 406
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SAPs(SNPs)/Variants
(0, 0)
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