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(-) Description

Title :  CRYSTAL STRUCTURE OF CENTRAL COILED-COIL FROM INFLUENZA HEMAGGLUTININ HA2 WITHOUT HEPTAD REPEAT STUTTER, SPACEGROUP P3(1)
 
Authors :  V. N. Malashkevich, C. D. Higgins, J. R. Lai, S. C. Almo
Date :  22 Mar 14  (Deposition) - 28 May 14  (Release) - 28 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Marburg Virus, Gp2 Ectodomain, Post-Fusion Conformation, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. N. Malashkevich, C. D. Higgins, J. R. Lai, S. C. Almo
Crystal Structure Of Central Coiled-Coil From Influenzahemagglutinin Ha2 Without Heptad Repeat Stutter, Spacegroup P3(1)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEMAGGLUTININ
    Chains: A, B, C, D, E, F
    Engineered: YES
    Mutation: YES
    Organism Common: AVIAN INFLUENZA VIRUS, INFLUENZAVIRUS, INFLUENZA VIRUS SP., INFLUENZA VIRUS
    Organism Scientific: UNIDENTIFIED INFLUENZA VIRUS
    Organism Taxid: 11309
    Other Details: PEPTIDE SYNTHESIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP

(-) Sites  (0, 0)

(no "Site" information available for 4P67)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P67)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4P67)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P67)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P67)

(-) Exons   (0, 0)

(no "Exon" information available for 4P67)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:39
                                                                      
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
                 Transcript --------------------------------------- Transcript
                  4p67 A 41 xWGSIDQINGKLNRVIEKFHQIEKEFSEVEGRIQDLEKY 83
                            |       50       |64        74         
                            |               58|                    
                           41-ACE            63                    


Chain B from PDB  Type:PROTEIN  Length:37
                                                                    
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                  4p67 B 43 GSIDQINGKLNRVIEKFHQIEKEFSEVEGRIQDLEKY 83
                                    52     || 66        76       
                                          58|                    
                                           63                    


Chain C from PDB  Type:PROTEIN  Length:38
                                                                     
               SCOP domains -------------------------------------- SCOP domains
               CATH domains -------------------------------------- CATH domains
               Pfam domains -------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------- PROSITE
                 Transcript -------------------------------------- Transcript
                  4p67 C 42 WGSIDQINGKLNRVIEKFHQIEKEFSEVEGRIQDLEKY 83
                                    51      ||65        75        
                                           58|                    
                                            63                    


Chain D from PDB  Type:PROTEIN  Length:39
                                                                      
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
                 Transcript --------------------------------------- Transcript
                  4p67 D 41 xWGSIDQINGKLNRVIEKFHQIEKEFSEVEGRIQDLEKY 83
                            |       50       |64        74         
                           41-ACE           58|                    
                                             63                    


Chain E from PDB  Type:PROTEIN  Length:37
                                                                    
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                  4p67 E 43 GSIDQINGKLNRVIEKFHQIEKEFSEVEGRIQDLEKY 83
                                    52     || 66        76       
                                          58|                    
                                           63                    


Chain F from PDB  Type:PROTEIN  Length:38
                                                                     
               SCOP domains -------------------------------------- SCOP domains
               CATH domains -------------------------------------- CATH domains
               Pfam domains -------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------- PROSITE
                 Transcript -------------------------------------- Transcript
                  4p67 F 42 WGSIDQINGKLNRVIEKFHQIEKEFSEVEGRIQDLEKY 83
                                    51      ||65        75        
                                           58|                    
                                            63
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P67)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P67)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P67)

(-) Gene Ontology  (3, 3)

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        A8TXX2_9ORTO | A8TXX2: 4oxm 4s1x

(-) Related Entries Specified in the PDB File

4oxm