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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN CAPERALPHA U2AF HOMOLOGY MOTIF (APO-STATE)
 
Authors :  S. Loerch, C. L. Kielkopf
Date :  12 Feb 14  (Deposition) - 14 May 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  U2Af Homology Motif, Uhm, Protein-Peptide Complex, Pre-Mrna Splicing Factor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Loerch, A. Maucuer, V. Manceau, M. R. Green, C. L. Kielkopf
Cancer-Relevant Splicing Factor Caper Alpha Engages The Essential Splicing Factor Sf3B155 In A Specific Ternary Complex.
J. Biol. Chem. V. 289 17325 2014
PubMed-ID: 24795046  |  Reference-DOI: 10.1074/JBC.M114.558825

(-) Compounds

Molecule 1 - RNA-BINDING PROTEIN 39
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P
    Expression System Strain: BL21 ROSETTA
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: 417-530
    Gene: CAPER, CAPERALPHA, FSAP59, HCC1, RBM39, RNPC2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HEPATOCELLULAR CARCINOMA PROTEIN 1, RNA-BINDING MOTIF PROTEIN 39, RNA-BINDING REGION-CONTAINING PROTEIN 2, SPLICING FACTOR HCC1
    Variant: ISOFORM B

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:501 , THR A:504 , ASN B:424 , LYS B:493 , MET B:494 , HOH B:659binding site for residue CL A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OZ0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OZ0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4OZ0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...........hhhhhhhhhhhhhhh......eeee........eeee..hhhhhhhhhhhhh..ee..ee.eeeeehhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 4oz0 A 412 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR 524
                                   421       431       441       451       461       471       481       491       501       511       521   


Chain B from PDB  Type:PROTEIN  Length:108
                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee.....hhhhh.hhhhhhhhhhhhhhh......eeee........eeee..hhhhhhhhhhhhh..ee..ee.eeeeehhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4oz0 B 415 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPS 522
                                   424       434       444       454       464       474       484       494       504       514
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OZ0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OZ0)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (14, 14)

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 Related Entries

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UniProtKB/Swiss-Prot
        RBM39_HUMAN | Q14498: 2jrs 2mhn 4oo6 4oz1 4yud

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