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(-) Description

Title :  HUMAN SOLAC COMPLEXED WITH (4-AMINO-FURAZAN-3-YL)-PHENYL-METHANONE
 
Authors :  M. Vinkovic
Date :  12 Feb 14  (Deposition) - 02 Apr 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (3x)
Keywords :  Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. M. Saalau-Bethell, V. Berdini, A. Cleasby, M. Congreve, J. E. Coyle V. Lock, C. W. Murray, M. A. O'Brien, S. J. Rich, T. Sambrook, M. Vinkovic, J. R. Yon, H. Jhoti
Crystal Structure Of Human Soluble Adenylate Cyclase Reveal A Distinct, Highly Flexible Allosteric Bicarbonate Binding Pocket.
Chemmedchem V. 9 823 2014
PubMed-ID: 24616449  |  Reference-DOI: 10.1002/CMDC.201300480

(-) Compounds

Molecule 1 - ADENYLATE CYCLASE TYPE 10
    Chains: A
    EC Number: 4.6.1.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Gene: ADCY10, SAC
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AH-RELATED PROTEIN, ADENYLATE CYCLASE HOMOLOG, GERM CELL SOLUBLE ADENYLYL CYCLASE, SAC, TESTICULAR SOLUBLE ADENYLYL CYCLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
11VK1Ligand/Ion(4-AZANYL-1,2,5-OXADIAZOL-3-YL)-PHENYL-METHANONE
2ACE1Mod. Amino AcidACETYL GROUP
3CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
4GOL2Ligand/IonGLYCEROL
Biological Unit 1 (4, 5)
No.NameCountTypeFull Name
11VK1Ligand/Ion(4-AZANYL-1,2,5-OXADIAZOL-3-YL)-PHENYL-METHANONE
2ACE1Mod. Amino AcidACETYL GROUP
3CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
4GOL2Ligand/IonGLYCEROL
Biological Unit 2 (4, 15)
No.NameCountTypeFull Name
11VK3Ligand/Ion(4-AZANYL-1,2,5-OXADIAZOL-3-YL)-PHENYL-METHANONE
2ACE3Mod. Amino AcidACETYL GROUP
3CME3Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
4GOL6Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:45 , LYS A:95 , ALA A:97 , LEU A:102 , LEU A:166 , VAL A:167 , PHE A:336 , MET A:337 , PHE A:338binding site for residue 1VK
2AC2SOFTWAREHIS A:162 , THR A:322 , LYS A:326 , GLY A:330 , GLN A:331 , ILE A:332 , HOH A:870binding site for residue GOL
3AC3SOFTWAREILE A:24 , VAL A:25 , TYR A:26 , GLY A:27 , HIS A:28 , PHE A:29 , LEU A:261 , SER A:264 , HOH A:810 , HOH A:1218binding site for residue GOL

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OYI)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg A:33 -Pro A:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OYI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OYI)

(-) Exons   (0, 0)

(no "Exon" information available for 4OYI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:469
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhh..hhhhhh........eeeeeeeeeeeeehhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..eeeee...eeeeeee.hhhhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeee....eeeeeehhhhhhhhhhhhhh....eeehhhhhhhh....eeeeee..eeeeeeeee......hhhhhhhhhhh......hhhhh...hhhhhh..hhhhhhhhhh..hhhhhhhhh.........eeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeee........hhhhhhhhhhhhhhhhhh....eeeeeeeeeeeeeeeeeeee..eeeeeeehhhhhhhhhhhhhh...eeehhhhhhhhh.hhh.eee...............eee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oyi A   0 xMNTPKEEFQDWPIVRIAAHLPDLIVYGHFSPERPFMDYFDGVLMFVDISGFTAMTEKFSSAMYMDRGAEQLVEILNYHISAIVEKVLIFGGDILKFAGDALLALWRVERKQLKNIITVVIKCSLEIHGLFETQEWEEGLDIRVKIGLAAGHISMLVFGDETHSHFLVIGQAVDDVRLAQNMAQMNDVILSPNCWQLCDRSMIEIESVPDQRAVKVNFLKPPPNFNFDEFFTKCTTFMHYYPSGEHKNLLRLAcTLKPDPELEMSLQKYVMESILKQIDNKQLQGYLSELRPVTIVFVNLMFEDQDKAEEIGPAIQDAYMHITSVLKIFQGQINKVFMFDKGCSFLCVFGFPGEKVPDELTHALECAMDIFDFCSQVHKIQTVSIGVASGIVFCGIVGHTVRHEYTVIGQKVNLAARMMMYYPGIVTCDSVTYNGSNLPAYFFKELPKKVMKGVADSGPLYQYWGRTEK 468
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249   |   259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459         
                            |                                                                                                                                                                                                                                                          253-CME                                                                                                                                                                                                                   
                            0-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OYI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OYI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OYI)

(-) Gene Ontology  (35, 35)

Asymmetric Unit(hide GO term definitions)

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  4oyi
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  ADCYA_HUMAN | Q96PN6
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  4.6.1.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADCYA_HUMAN | Q96PN6: 4clf 4clk 4cll 4clp 4cls 4clt 4clu 4clw 4cly 4clz 4cm0 4cm2 4oya 4oyb 4oym 4oyo 4oyp 4oyw 4oyx 4oyz 4oz2 4oz3 4ust 4usu 4usv 4usw 5d0r 5iv3 5iv4

(-) Related Entries Specified in the PDB File

4oya 4oyb 4oym 4oyo 4oyp 4oyw 4oyx 4oyz 4oz2 4oz3