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(-) Description

Title :  HUMAN SOLAC COMPLEXED WITH AMPCPP
 
Authors :  M. Vinkovic
Date :  13 Feb 14  (Deposition) - 02 Apr 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (3x)
Keywords :  Protein-Substrate Analogue Complex, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. M. Saalau-Bethell, V. Berdini, A. Cleasby, M. Congreve, J. E. Coyle V. Lock, C. W. Murray, M. A. O'Brien, S. J. Rich, T. Sambrook, M. Vinkovic, J. R. Yon, H. Jhoti
Crystal Structure Of Human Soluble Adenylate Cyclase Reveal A Distinct, Highly Flexible Allosteric Bicarbonate Binding Pocket.
Chemmedchem V. 9 823 2014
PubMed-ID: 24616449  |  Reference-DOI: 10.1002/CMDC.201300480

(-) Compounds

Molecule 1 - ADENYLATE CYCLASE TYPE 10
    ChainsA
    EC Number4.6.1.1
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System Taxid7108
    GeneADCY10, SAC
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymAH-RELATED PROTEIN, ADENYLATE CYCLASE HOMOLOG, GERM CELL SOLUBLE ADENYLYL CYCLASE, SAC, TESTICULAR SOLUBLE ADENYLYL CYCLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (1x)A
Biological Unit 2 (3x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric Unit (5, 5)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2APC1Ligand/IonDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
3CA1Ligand/IonCALCIUM ION
4CL1Ligand/IonCHLORIDE ION
5CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2APC1Ligand/IonDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
3CA-1Ligand/IonCALCIUM ION
4CL-1Ligand/IonCHLORIDE ION
5CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
Biological Unit 2 (3, 9)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2APC3Ligand/IonDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
3CA-1Ligand/IonCALCIUM ION
4CL-1Ligand/IonCHLORIDE ION
5CME3Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:47 , ILE A:48 , SER A:49 , GLY A:50 , PHE A:51 , THR A:52 , ALA A:97 , GLY A:98 , ASP A:99 , PHE A:296 , PHE A:336 , PHE A:338 , LEU A:345 , VAL A:406 , VAL A:411 , ASN A:412 , ALA A:415 , ARG A:416 , GLY A:452 , CA A:502 , HOH A:739 , HOH A:741 , HOH A:846 , HOH A:852 , HOH A:870 , HOH A:929 , HOH A:997binding site for residue APC A 501
2AC2SOFTWAREASP A:47 , ILE A:48 , ASP A:99 , APC A:501 , HOH A:848binding site for residue CA A 502
3AC3SOFTWARELYS A:95 , VAL A:167 , HOH A:838binding site for residue CL A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OYX)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg A:33 -Pro A:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OYX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OYX)

(-) Exons   (0, 0)

(no "Exon" information available for 4OYX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:469
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhh.hhhhhh........eeeeeeeeeeeeeeehhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeeee.hhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeeee....eeeeeehhhhhhhhhhhhhh....eeehhhhhhhh....eeeeee..eeeeeeeee......hhhhhhhhhhh......hhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhh.........eeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh...eeeeeee....eeeeeee........hhhhhhhhhhhhhhhhhh....eeeeeeeeeeeeeeeeeeee..eeeeeeehhhhhhhhhhhhhh...eeeehhhhhhhh.hhh.eee..............eeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oyx A   0 xMNTPKEEFQDWPIVRIAAHLPDLIVYGHFSPERPFMDYFDGVLMFVDISGFTAMTEKFSSAMYMDRGAEQLVEILNYHISAIVEKVLIFGGDILKFAGDALLALWRVERKQLKNIITVVIKCSLEIHGLFETQEWEEGLDIRVKIGLAAGHISMLVFGDETHSHFLVIGQAVDDVRLAQNMAQMNDVILSPNCWQLCDRSMIEIESVPDQRAVKVNFLKPPPNFNFDEFFTKCTTFMHYYPSGEHKNLLRLAcTLKPDPELEMSLQKYVMESILKQIDNKQLQGYLSELRPVTIVFVNLMFEDQDKAEEIGPAIQDAYMHITSVLKIFQGQINKVFMFDKGCSFLCVFGFPGEKVPDELTHALECAMDIFDFCSQVHKIQTVSIGVASGIVFCGIVGHTVRHEYTVIGQKVNLAARMMMYYPGIVTCDSVTYNGSNLPAYFFKELPKKVMKGVADSGPLYQYWGRTEK 468
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249   |   259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459         
                            |                                                                                                                                                                                                                                                          253-CME                                                                                                                                                                                                                   
                            0-ACE                                                                                                                                                                                                                                                                                                                                                                                                                                                                                

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OYX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OYX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OYX)

(-) Gene Ontology  (35, 35)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADCYA_HUMAN | Q96PN64clf 4clk 4cll 4clp 4cls 4clt 4clu 4clw 4cly 4clz 4cm0 4cm2 4oya 4oyb 4oyi 4oym 4oyo 4oyp 4oyw 4oyz 4oz2 4oz3 4ust 4usu 4usv 4usw 5d0r 5iv3 5iv4

(-) Related Entries Specified in the PDB File

4oya 4oyb 4oyi 4oym 4oyo 4oyp 4oyw 4oyz 4oz2 4oz3