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(-) Description

Title :  CRYSTAL STRUCTURE OF RPN11 IN A HETERODIMER COMPLEX WITH RPN8, REPRESENTING THE ACTIVE PORTION OF THE PROTEOSOME LID.
 
Authors :  Z. Yu, W. Mansour, M. A. Nakasone, M. H. Glickman, H. Dvir
Date :  03 Feb 14  (Deposition) - 05 Aug 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Proteosome, Deubiquitination, Ubiquitin, Metalloprotease, Zinc, Mpn Domain, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Yu, W. Mansour, M. A. Nakasone, E. Pick, M. H. Glickman, H. Dvir
Crystal Structure Of Rpn11 In A Heterodimer Complex With Rpn8, Representing The Active Portion Of The Proteosome Lid In Preparation.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 26S PROTEASOME REGULATORY SUBUNIT RPN8
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETDUET
    Expression System Strain: BL21 - ROSSETTA
    Expression System Taxid: 562
    Expression System Vector: PLASMID
    Gene: O5360,RPN8,YOR261C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
 
Molecule 2 - 26S PROTEASOME REGULATORY SUBUNIT RPN11
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETDUET
    Expression System Strain: BL21 - ROSSETTA
    Expression System Taxid: 562
    Expression System Vector: PLASMID
    Gene: MPR1,RPN11,YFR004W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: PROTEIN MPR1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS B:109 , HIS B:111 , ASP B:122 , HOH B:401binding site for residue ZN B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OWP)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly A:96 -Pro A:97
2Lys B:24 -Glu B:25
3Val B:45 -Pro B:46

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OWP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OWP)

(-) Exons   (0, 0)

(no "Exon" information available for 4OWP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeehhhhhhhhhhhhhhh........eeeeeee....eeeeeeeee..eee.......eeehhhhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhh......eeeee.........eeeeeeeee..eeeeeee.eee..hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4owp A   2 SLQHEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGGLPTDAYVAIEQVTEKTFLHLPCTIEAEEAEEIGVEHLLRDV 178
                                    11        21        31        41        51        61        71        81        91       101       111       121       132       142||     158       168       178
                                                                                                                                                         129|         143|                            
                                                                                                                                                          131          150                            


Chain B from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeee........hhhhhhhhhhhhhhhhhhh.....eeeeeeee........hhhhhhhhhhhhhhh...eeeee...........eeeeee.....eeeeeeeee.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4owp B  24 KETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTRHYYSLNIDYHKTAKETKMLMNLHKEQW 221
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       195       205       215      
                                                                                                                                                                   161|                           
                                                                                                                                                                    194
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OWP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OWP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OWP)

(-) Gene Ontology  (21, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  RPN8_YEAST | Q08723
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RPN11_YEAST | P43588: 3j47 3jck 3jco 3jcp 4cr2 4cr3 4cr4 4o8x 4o8y 4ocl 4ocm 4ocn 5a5b 5mpb 5mpc 5mpd 5mpe 5wvi 5wvk
        RPN8_YEAST | Q08723: 3j47 3jck 3jco 3jcp 4cr2 4cr3 4cr4 4o8x 4o8y 4ocl 4ocm 4ocn 5a5b 5mpb 5mpc 5mpd 5mpe 5wvi 5wvk

(-) Related Entries Specified in the PDB File

4o8x SIMILAR TO THE 4O8X STRUCTURE, THOUGH SOLVED INDEPENDENTLY IN APPROXIMATELY THE SAME TIME.
4o8y SIMILAR TO THE 4O8Y STRUCTURE, THOUGH SOLVED INDEPENDENTLY IN APPROXIMATELY THE SAME TIME.