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(-) Description

Title :  THE CRYSTAL STRUCTURE OF URDAMYCIN C-6 KETOREDUCTASE DOMAIN URDMRED WITH BOUND NADP AND RABELOMYCIN
 
Authors :  L. Niiranen, P. Paananen, P. Patrikainen, M. Metsa-Ketela
Date :  13 Feb 14  (Deposition) - 01 Oct 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Rossmann Fold, Ketoreductase, Nadph Binding, Oxidoreductase- Oxidoreductase Inhibitor Complex, Oxidoreductase-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Patrikainen, L. Niiranen, K. Thapa, P. Paananen, P. Tahtinen, P. Mantsala, J. Niemi, M. Metsa-Ketela
Structure-Based Engineering Of Angucyclinone 6-Ketoreductases.
Chem. Biol. V. 21 1381 2014
PubMed-ID: 25200607  |  Reference-DOI: 10.1016/J.CHEMBIOL.2014.07.017

(-) Compounds

Molecule 1 - OXYGENASE-REDUCTASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBAD DERIVATIVE
    Expression System Strain: TOP10
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL REDUCTASE DOMAIN
    Gene: URDM
    Organism Scientific: STREPTOMYCES FRADIAE
    Organism Taxid: 1906
    Strain: TU2717

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
12V41Ligand/IonRABELOMYCIN
2NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:13 , SER A:15 , ARG A:16 , GLY A:17 , ILE A:18 , HIS A:36 , CYS A:37 , SER A:38 , ALA A:63 , GLU A:64 , LEU A:65 , ASN A:97 , ALA A:98 , VAL A:100 , ARG A:116 , VAL A:120 , ILE A:145 , SER A:146 , SER A:147 , TYR A:160 , LYS A:164 , PRO A:190 , GLY A:191 , THR A:193 , ASN A:195 , 2V4 A:302 , HOH A:428BINDING SITE FOR RESIDUE NAP A 301
2AC2SOFTWAREMET A:101 , SER A:147 , GLY A:148 , LEU A:149 , TYR A:160 , ILE A:192 , NAP A:301BINDING SITE FOR RESIDUE 2V4 A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OSP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OSP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OSP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OSP)

(-) Exons   (0, 0)

(no "Exon" information available for 4OSP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4osp A   2 GKLTGKTALVTGSSRGIGRATAIRLAREGALVAVHCSRNREAADETVATIEKEGGRAFSVLAELGVPGDVHELFLALERGLKERTDATTLDILVNNAGVMGGVAPEEVTPELFDRLVAVNAKAPFFIVQRALTLIPDGGRIINISSGLTRFANPQEVAYAMTKGAMDQLTLHFAKHLGSRNITVNSVGPGITNNGTPVFDNPEAVAQMAGYSVFNRVGEVTDVADVVAFLAGDDARWITGSYLDASGGTLLG 253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251  


Chain B from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhh.....eeee.............hhhhhhhhhhhhhhhhhhhhhhhh.......eeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..ee..hhhhhhhhhhhhhhh.......eehhhhhhhhhhhhhhhhh.....eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4osp B   1 SGKLTGKTALVTGSSRGIGRATAIRLAREGALVAVHCSRNREAADETVATIEKEGGRAFSVLAELGVPGDVHELFLALERGLKERTDATTLDILVNNAGVMGGVAPEEVTPELFDRLVAVNAKAPFFIVQRALTLIPDGGRIINISSGLTRFANPQEVAYAMTKGAMDQLTLHFAKHLGSRNITVNSVGPGITNNGTPVFDNPEAVAQMAGYSVFNRVGEVTDVADVVAFLAGDDARWITGSYLDASGGTLLG 253
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250   


Chain C from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..ee.........hhhhhhhh.......eehhhhhhhhhhhhhhhhh.....eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4osp C   2 GKLTGKTALVTGSSRGIGRATAIRLAREGALVAVHCSRNREAADETVATIEKEGGRAFSVLAELGVPGDVHELFLALERGLKERTDATTLDILVNNAGVMGGVAPEEVTPELFDRLVAVNAKAPFFIVQRALTLIPDGGRIINISSGLTRFANPQEVAYAMTKGAMDQLTLHFAKHLGSRNITVNSVGPGITNNGTPVFDNPEAVAQMAGYSVFNRVGEVTDVADVVAFLAGDDARWITGSYLDASGGTLLG 253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251  


Chain D from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....hhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4osp D   1 SGKLTGKTALVTGSSRGIGRATAIRLAREGALVAVHCSRNREAADETVATIEKEGGRAFSVLAELGVPGDVHELFLALERGLKERTDATTLDILVNNAGVMGGVAPEEVTPELFDRLVAVNAKAPFFIVQRALTLIPDGGRIINISSGLTRFANPQEVAYAMTKGAMDQLTLHFAKHLGSRNITVNSVGPGITNPEAVAQMAGYSVFNRVGEVTDVADVVAFLAGDDARWITGSYLDASGGTLLG 253
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   ||  208       218       228       238       248     
                                                                                                                                                                                                                           194|                                                  
                                                                                                                                                                                                                            203
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OSP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OSP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OSP)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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(-) Related Entries Specified in the PDB File

4oso THE RELATED ENZYME LANDOMYCIN C-6 KETOREDUCTASE LANV WITH SAME LIGANDS (BOUND NADP AND RABELOMYCIN)