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(-) Description

Title :  THE CRYSTAL STRUCTURE OF LANDOMYCIN C-6 KETOREDUCTASE LANV WITH BOUND NADP AND RABELOMYCIN
 
Authors :  P. Paananen, L. Niiranen, P. Patrikainen, M. Metsa-Ketela
Date :  13 Feb 14  (Deposition) - 01 Oct 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Rossmann Fold, Ketoreductase, Nadph Binding, Oxidoreductase- Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Patrikainen, L. Niiranen, K. Thapa, P. Paananen, P. Tahtinen, P. Mantsala, J. Niemi, M. Metsa-Ketela
Structure-Based Engineering Of Angucyclinone 6-Ketoreductases.
Chem. Biol. V. 21 1381 2014
PubMed-ID: 25200607  |  Reference-DOI: 10.1016/J.CHEMBIOL.2014.07.017

(-) Compounds

Molecule 1 - REDUCTASE HOMOLOG
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBAD DERIVATIVE
    Expression System Strain: TOP10
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LANV
    Organism Scientific: STREPTOMYCES CYANOGENUS
    Organism Taxid: 80860
    Strain: S136

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
12V42Ligand/IonRABELOMYCIN
2NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
12V44Ligand/IonRABELOMYCIN
2NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3PEG4Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:13 , SER A:15 , ARG A:16 , GLY A:17 , ILE A:18 , HIS A:36 , TYR A:37 , ALA A:38 , THR A:39 , GLY A:40 , ALA A:63 , LEU A:65 , ASN A:97 , ALA A:98 , GLY A:99 , MET A:101 , ARG A:116 , VAL A:120 , VAL A:145 , SER A:146 , TYR A:160 , LYS A:164 , PRO A:190 , GLY A:191 , THR A:193 , ASN A:195 , 2V4 A:302 , HOH A:435BINDING SITE FOR RESIDUE NAP A 301
2AC2SOFTWAREMET A:101 , SER A:147 , GLY A:148 , LEU A:149 , TYR A:160 , PRO A:190 , GLY A:191 , LEU A:209 , LEU A:212 , THR A:250 , NAP A:301BINDING SITE FOR RESIDUE 2V4 A 302
3AC3SOFTWAREMET A:136 , HOH A:452BINDING SITE FOR RESIDUE PEG A 303
4AC4SOFTWAREGLY B:13 , SER B:15 , ARG B:16 , GLY B:17 , ILE B:18 , HIS B:36 , ALA B:38 , THR B:39 , GLY B:40 , ALA B:63 , LEU B:65 , ASN B:97 , VAL B:100 , MET B:101 , ARG B:116 , VAL B:120 , VAL B:145 , SER B:146 , TYR B:160 , LYS B:164 , PRO B:190 , GLY B:191 , THR B:193 , ASN B:195 , 2V4 B:302 , HOH B:431 , HOH B:443BINDING SITE FOR RESIDUE NAP B 301
5AC5SOFTWAREMET B:101 , MET B:103 , SER B:147 , GLY B:148 , LEU B:149 , GLN B:157 , TYR B:160 , PRO B:190 , GLY B:191 , LEU B:209 , LEU B:212 , THR B:250 , NAP B:301BINDING SITE FOR RESIDUE 2V4 B 302
6AC6SOFTWAREASP B:90 , SER B:134 , HOH B:419BINDING SITE FOR RESIDUE PEG B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OSO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OSO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OSO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OSO)

(-) Exons   (0, 0)

(no "Exon" information available for 4OSO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh....eeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4oso A   2 GNLTGKTALVTGASRGIGRAIAEKLGYAGALVAVHYATGADAAAEVAESIEKDGGRAFTVKAELGVPGDVDVLFEGLERGLKERTGATDLDILVNNAGVMAMGAPEEVTPEMFDRMMAVNAKAPFFIVQRALSVMPDGGRIINVSSGLTRVASPDQVTYGMSKGALEQIALHFSRHLGSRRITVNSVAPGSTDNGSALFQIPEVRETLSQLSTFGEVAEPAAIADVVAFLASEDARWITGAFIDASGGTLLG 253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251  


Chain B from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.......hhhhh.......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oso B  -1 HRSGNLTGKTALVTGASRGIGRAIAEKLGYAGALVAVHYATGADAAAEVAESIEKDGGRAFTVKAELGVPGDVDVLFEGLERGLKERTGATDLDILVNNAGVMAMGAPEEVTPEMFDRMMAVNAKAPFFIVQRALSVMPDGGRIINVSSGLTRVASPDQVTYGMSKGALEQIALHFSRHLGSRRITVNSVAPGSTDNGSTLSQLSTFGEVAEPAAIADVVAFLASEDARWITGAFIDASGGTLLG 253
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       208       218       228       238       248     
                                                                                                                                                                                                                                197|                                             
                                                                                                                                                                                                                                 208
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OSO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OSO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OSO)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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  4oso
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  Q9ZGC1_STRCY | Q9ZGC1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9ZGC1_STRCY | Q9ZGC1: 4kwh 4kwi

(-) Related Entries Specified in the PDB File

4kwh SAME PROTEIN WITH BOUND NADP
4kwi SAME PROTEIN WITH BOUND NADP AND 11-DEOXY-6-OXYLANDOMYCINONE
4osp