Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  M. TUBERCULOSIS 1-DEOXY-D-XYLULOSE-5-PHOSPHATE REDUCTOISOMERASE W203Y MUTANT BOUND TO FOSMIDOMYCIN AND NADPH
 
Authors :  C. L. Allen, S. A. Kholodar, A. S. Murkin, A. M. Gulick
Date :  31 Jan 14  (Deposition) - 18 Jun 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Reductoisomerase, Oxidoreductase-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. A. Kholodar, G. Tombline, J. Liu, Z. Tan, C. L. Allen, A. M. Gulick, A. S. Murkin
Alteration Of The Flexible Loop In 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase Boosts Enthalpy-Driven Inhibition By Fosmidomycin.
Biochemistry V. 53 3423 2014
PubMed-ID: 24825256  |  Reference-DOI: 10.1021/BI5004074

(-) Compounds

Molecule 1 - 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE
    Chains: A, B, C, D
    EC Number: 1.1.1.267
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-389
    Gene: DXR, RVBD_2870C
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV
    Synonym: DXP REDUCTOISOMERASE, 1-DEOXYXYLULOSE-5-PHOSPHATE REDUCTOISOMERASE, 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE SYNTHASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1FOM4Ligand/Ion3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID
2MN4Ligand/IonMANGANESE (II) ION
3NDP4Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1FOM2Ligand/Ion3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID
2MN-1Ligand/IonMANGANESE (II) ION
3NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1FOM2Ligand/Ion3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID
2MN-1Ligand/IonMANGANESE (II) ION
3NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:151 , SER A:152 , GLU A:153 , ALA A:176 , SER A:177 , HIS A:200 , TYR A:203 , MET A:205 , SER A:213 , ASN A:218 , LYS A:219 , GLU A:222 , MN A:501 , NDP A:502 , HOH A:610 , HOH A:612 , HOH A:614BINDING SITE FOR RESIDUE FOM A 500
02AC2SOFTWAREASP A:151 , GLU A:153 , GLU A:222 , FOM A:500BINDING SITE FOR RESIDUE MN A 501
03AC3SOFTWAREGLY A:19 , THR A:21 , GLY A:22 , SER A:23 , ILE A:24 , ALA A:46 , GLY A:47 , GLY A:48 , ALA A:49 , HIS A:50 , ALA A:69 , ALA A:103 , LEU A:104 , VAL A:105 , LEU A:108 , ALA A:126 , ASN A:127 , LYS A:128 , GLU A:129 , ASP A:151 , MET A:205 , GLY A:206 , ASN A:209 , MET A:267 , FOM A:500 , HOH A:603 , HOH A:622 , HOH A:632 , HOH A:634 , HOH A:636 , HOH A:637 , HOH A:643 , HOH A:661 , HOH A:665 , HOH A:697 , HOH A:710 , HOH A:742 , HOH A:755 , HOH A:793BINDING SITE FOR RESIDUE NDP A 502
04AC4SOFTWAREASP B:151 , SER B:152 , GLU B:153 , ALA B:176 , SER B:177 , HIS B:200 , TYR B:203 , MET B:205 , SER B:213 , ASN B:218 , LYS B:219 , GLU B:222 , MN B:501 , NDP B:502 , HOH B:602 , HOH B:628 , HOH B:634BINDING SITE FOR RESIDUE FOM B 500
05AC5SOFTWAREASP B:151 , GLU B:153 , GLU B:222 , FOM B:500BINDING SITE FOR RESIDUE MN B 501
06AC6SOFTWAREGLY B:19 , THR B:21 , GLY B:22 , SER B:23 , ILE B:24 , ALA B:46 , GLY B:47 , GLY B:48 , ALA B:49 , HIS B:50 , ALA B:69 , ALA B:103 , LEU B:104 , ALA B:126 , ASN B:127 , LYS B:128 , GLU B:129 , ASP B:151 , MET B:205 , GLY B:206 , ASN B:209 , MET B:267 , FOM B:500 , HOH B:610 , HOH B:630 , HOH B:632 , HOH B:636 , HOH B:643 , HOH B:654 , HOH B:673 , HOH B:742 , HOH B:779 , HOH B:823 , HOH B:840 , HOH B:872 , HOH B:927BINDING SITE FOR RESIDUE NDP B 502
07AC7SOFTWAREASP C:151 , SER C:152 , GLU C:153 , ALA C:176 , SER C:177 , HIS C:200 , TYR C:203 , SER C:213 , ASN C:218 , LYS C:219 , GLU C:222 , MET C:267 , MN C:501 , NDP C:502 , HOH C:603 , HOH C:615 , HOH C:631BINDING SITE FOR RESIDUE FOM C 500
08AC8SOFTWARELYS C:128 , ASP C:151 , GLU C:153 , GLU C:222 , FOM C:500BINDING SITE FOR RESIDUE MN C 501
09AC9SOFTWAREGLY C:19 , THR C:21 , GLY C:22 , SER C:23 , ILE C:24 , ALA C:46 , GLY C:47 , GLY C:48 , ALA C:49 , HIS C:50 , ALA C:69 , ALA C:103 , LEU C:104 , LEU C:108 , ALA C:126 , ASN C:127 , LYS C:128 , GLU C:129 , ASP C:151 , MET C:205 , GLY C:206 , PRO C:207 , ASN C:209 , MET C:267 , FOM C:500 , HOH C:613 , HOH C:625 , HOH C:632 , HOH C:634 , HOH C:647 , HOH C:651 , HOH C:655 , HOH C:680 , HOH C:801 , HOH C:804 , HOH C:840 , HOH C:940BINDING SITE FOR RESIDUE NDP C 502
10BC1SOFTWARELYS D:128 , ASP D:151 , SER D:152 , GLU D:153 , ALA D:176 , SER D:177 , HIS D:200 , TYR D:203 , MET D:205 , SER D:213 , ASN D:218 , LYS D:219 , GLU D:222 , MN D:501 , NDP D:502 , HOH D:610 , HOH D:613 , HOH D:636BINDING SITE FOR RESIDUE FOM D 500
11BC2SOFTWAREASP D:151 , GLU D:153 , GLU D:222 , FOM D:500BINDING SITE FOR RESIDUE MN D 501
12BC3SOFTWAREGLY D:19 , THR D:21 , GLY D:22 , SER D:23 , ILE D:24 , ALA D:46 , GLY D:47 , GLY D:48 , ALA D:49 , HIS D:50 , ALA D:69 , ALA D:103 , LEU D:104 , ALA D:126 , ASN D:127 , LYS D:128 , GLU D:129 , ASP D:151 , MET D:205 , GLY D:206 , ASN D:209 , MET D:267 , FOM D:500 , HOH D:614 , HOH D:615 , HOH D:622 , HOH D:643 , HOH D:647 , HOH D:681 , HOH D:719 , HOH D:752 , HOH D:765 , HOH D:863 , HOH D:881 , HOH D:888 , HOH D:898 , HOH D:947BINDING SITE FOR RESIDUE NDP D 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OOE)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Trp A:277 -Pro A:278
2Trp B:277 -Pro B:278
3Trp C:277 -Pro C:278
4Trp D:277 -Pro D:278

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OOE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OOE)

(-) Exons   (0, 0)

(no "Exon" information available for 4OOE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:376
                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhhh...eee.hhhhhhhhh...ee..hhhhhhhhh....eeee...hhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhh.eeeeeeee........hhhhhh..hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee.....eeeeeee....eeeee....hhhhhhhhhhh................eeeee........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ooe A  12 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAARPGQIVPVDSEHSALAQCLRGGTPDEVAKLVLTASGGPFRGWSAADLEHVTPEQAGAHPTYSMGPMNTLNSASLVNKGLEVIETHLLFGIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAACDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATVDDVLDAQRWARERAQRAVS 387
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381      


Chain B from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhhh...eee.hhhhhhhhh...ee..hhhhhhhhh....eeee...hhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhh.eeeeeeee........hhhhhh....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee.....eeeeeee....eeeee....hhhhhhhhhhh................eeeee........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ooe B  12 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAARPGQIVPVDSEHSALAQCLRGGTPDEVAKLVLTASGGPFRGWSAADLEHVTPEQAGAHPTYSMGPMNTLNSASLVNKGLEVIETHLLFGIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAACDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATVDDVLDAQRWARERAQRAVSGM 389
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381        


Chain C from PDB  Type:PROTEIN  Length:377
                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhhh...eee.hhhhhhhhh...ee..hhhhhhhhh....eeee...hhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhh.eeeeeeee........hhhhhh..hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee.....eeeeeee....eeeee....hhhhhhhhhhh................eeeee........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ooe C  12 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAARPGQIVPVDSEHSALAQCLRGGTPDEVAKLVLTASGGPFRGWSAADLEHVTPEQAGAHPTYSMGPMNTLNSASLVNKGLEVIETHLLFGIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAACDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATVDDVLDAQRWARERAQRAVSG 388
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       


Chain D from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhhh...eee.hhhhhhhhh...ee..hhhhhhhhhh...eeee...hhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhh.eeeeeeee........hhhhhh..hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee.....eeeeeee....eeeee....hhhhhhhhhhh................eeeee........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ooe D  12 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAARPGQIVPVDSEHSALAQCLRGGTPDEVAKLVLTASGGPFRGWSAADLEHVTPEQAGAHPTYSMGPMNTLNSASLVNKGLEVIETHLLFGIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAACDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATVDDVLDAQRWARERAQRAVSGM 389
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OOE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OOE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OOE)

(-) Gene Ontology  (14, 22)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    FOM  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NDP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Trp A:277 - Pro A:278   [ RasMol ]  
    Trp B:277 - Pro B:278   [ RasMol ]  
    Trp C:277 - Pro C:278   [ RasMol ]  
    Trp D:277 - Pro D:278   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4ooe
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  DXR_MYCTU | P9WNS1
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  I6YAH0_MYCTU | I6YAH0
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.1.1.267
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  DXR_MYCTU | P9WNS1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  I6YAH0_MYCTU | I6YAH0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DXR_MYCTU | P9WNS1: 2c82 2jcv 2jcx 2jcy 2jd0 2jd1 2jd2 2y1c 2y1d 2y1e 2y1f 2y1g 3ras 3zhx 3zhy 3zhz 3zi0 4a03 4aic 4oof 4rcv
        I6YAH0_MYCTU | I6YAH0: 4oof 4rcv

(-) Related Entries Specified in the PDB File

3zhx DXR
4aic DXR
4oof