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(-) Description

Title :  COMPLETE HUMAN RNASE L IN COMPLEX WITH BIOLOGICAL ACTIVATORS.
 
Authors :  Y. Han, J. Donovan, S. Rath, G. Whitney, A. Chitrakar, A. Korennykh
Date :  06 Jan 14  (Deposition) - 12 Mar 14  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,C
Biol. Unit 1:  A,C  (2x)
Keywords :  Rnase L, Rnasel, 2-5A, 2', 5'-Oligoadenylate, Interferon, Ken, Pseudokinase, Kinase, Inflammation, Ire1, Ridd, Regulated Rna Decay, Splicing Cleavage, Hpc1, Hereditary Prostate Cancer 1, Rnase L Kinase-Homology And Ken Domain-Containing, Innate Immunity, Interferon Response, Antiviral Response, 2-5A (2', 5'-Linked Oligoadenylate)And Rna, Hydrolase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Han, J. Donovan, S. Rath, G. Whitney, A. Chitrakar, A. Korennykh
Structure Of Human Rnase L Reveals The Basis For Regulated Rna Decay In The Ifn Response.
Science V. 343 1244 2014
PubMed-ID: 24578532  |  Reference-DOI: 10.1126/SCIENCE.1249845

(-) Compounds

Molecule 1 - 2-5A-DEPENDENT RIBONUCLEASE
    Chains: C
    EC Number: 3.1.26.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 21-719
    Gene: RNASEL, RNS4
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 2-5A-DEPENDENT RNASE, RIBONUCLEASE 4, RIBONUCLEASE L, RNASE L
 
Molecule 2 - RNA (5'-R(P*A*AP*A)-2')
    Chains: A
    Engineered: YES
    Other Details: CHEMICAL SYNTHESIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AC
Biological Unit 1 (2x): AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE C:371 , ALA C:372 , THR C:374 , ILE C:379 , ALA C:390 , LYS C:392 , VAL C:434 , THR C:435 , CYS C:437 , THR C:440 , GLN C:489 , ASN C:490 , LEU C:492 , ASP C:503 , ASP C:505 , MG C:802 , MG C:803 , HOH C:923 , HOH C:925 , HOH C:993BINDING SITE FOR RESIDUE ADP C 801
2AC2SOFTWAREGLN C:487 , ASN C:490 , ASP C:503 , ADP C:801 , MG C:803 , HOH C:923BINDING SITE FOR RESIDUE MG C 802
3AC3SOFTWAREASP C:503 , ASP C:505 , ADP C:801 , MG C:802BINDING SITE FOR RESIDUE MG C 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OAU)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys C:496 -Lys C:497
2Asn C:637 -Glu C:638

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OAU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OAU)

(-) Exons   (0, 0)

(no "Exon" information available for 4OAU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:RNA  Length:3
                                   
                 4oau A   1 AAA   3


Chain C from PDB  Type:PROTEIN  Length:692
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh.hhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh..........hhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhh....hhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhh...............hhhhhhhhh.hhhhhhhhhhh.......hhhhhhhhh.hhhhhhhhhhh....................hhhhhhhhhh........ee......eeeee..eeeeeee....eeeeeeee..hhhhhhhhhhhhh.........eeeeee...eeeeeee...eehhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhh.eee.....eee...........hhhhhhhhhhhhhhhhhhhhh....hhhhhh....hhhhhh..hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh....hhhhhhh.........hhhhhh.hhhhhhhhhhhh........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oau C  25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLVMTARRNYDHSLVKVLLSHGAKEDFHPPAEDWKPQSSHWGAALKDLHRIYRPMIGKLKFFIDEKYKIADTSEGGIYLGFYEKQEVAVKTFCEGSPRAQREVSCLQSSRENSHLVTFYGSESHRGHLFVCVTLCEQTLEACLDVHRGEDVENEEDEFARNVLSSIFKAVQELHLSCGYTHQDLQPQNILIDSKKAAHLADFDKSIKWAGDPQEVKRDLEDLGRLVLYVVKKGSISFEDLKAQSNEEVVQLSPDEETKDLIHRLFHPGEHVRDCLSDLLGHPFFWTWESRYRTLRNVGNESDIKTRKSESEILRLLQPEHSKSFDKWTTKINECVMKKMNKFYEKRGNFYQNTVGDLLKFIRNLGENIDEEKHKKMKLKIGDPSLYFQKTFPDLVIYVYTKLQNTEYRKHFPQT 719
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614     ||627       637       647       657       667       677       687       697       707       717  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             620|                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              624
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OAU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OAU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OAU)

(-) Gene Ontology  (32, 32)

Asymmetric Unit(hide GO term definitions)

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  4oau
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  RN5A_HUMAN | Q05823
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  3.1.26.-
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 Related Entries

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UniProtKB/Swiss-Prot
        RN5A_HUMAN | Q05823: 1wdy 4g8k 4g8l 4oav

(-) Related Entries Specified in the PDB File

4oav